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Protein Overview: gi|5163509, gi|4...

General Information:
Name(s) found: gi|9758631 [NCBI NR]
gi|5163509 [NCBI NR]
gi|41619468 [NCBI NR]
gi|225879122 [NCBI NR]
gi|15241132 [NCBI NR]
Description(s) found:
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  • gi|9758631|dbj|BAB09293.1| Atmyb103 [Arabidopsis thaliana] [NCBI NR]
  • gi|5163509|gb|AAD40692.1|AF048839_1 Atmyb103 [Arabidopsis thaliana] [NCBI NR]
  • gi|41619468|gb|AAS10109.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|225879122|dbj|BAH30631.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15241132|ref|NP_200422.1| ATMYB103 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 103); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • (Q9XHV0) ATMYB103 [athaliana3702.FASTAC.txt]
  • Atmyb103 [Arabidopsis thaliana]gi|5163509|gb|AAD40692.1| Atmyb103 [Arabidopsis thaliana]gi|15241132|ref|NP_200422.1| myb family transcription factor [Arabidopsis thaliana]gi|41619468|gb|AAS10109.1| MYB transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATMYB80, ATMYB103, MYB103, MS188 | ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor | chr5:22736417-22737890 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Atmyb103 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AtMYB103, ATMYB80, MYB103, MS188 | myb domain protein 103 | chr5:22719191-22720664 FORWARD LENGTH=320 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Atmyb103 OS=Arabidopsis thaliana GN=MYB103 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 320 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: tapetal layer development [IMP]
    regulation of transcription, DNA-dependent [TAS]
    trichome morphogenesis [IMP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
   61 LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT DNDVKNYWNT KLKKKLSGMG 120
  121 IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN 180
  181 PNPNNFHEIA DNEAGKIKMD GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA 240
  241 VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV 300
  301 FNVDNVLWDL QADDLINHMV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] PSI-BLAST 36.522879 c-Myb, DNA-binding domain
    2 View Details [119..320] MSA 2.580996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle