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Protein Overview: SKIP_ARATH

General Information:
Name(s) found: SKIP_ARATH [Swiss-Prot]
Description(s) found:
Found 25 descriptions.
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  • SNW/SKI-interacting protein OS=Arabidopsis thaliana GN=SKIP PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 613 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    nucleolus [IDA]
    Biological Process: RNA splicing [ISS]
    response to abscisic acid stimulus [IEP]
    response to salt stress [IEP]
    response to mannitol stimulus [IEP]
    Molecular Function: transcription activator activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLNDLPAP KSTTTTYYDH SNDAWFKNRV TESETVKSSS IKFKVVPAYL NRQGLRPKNP  60
   61 EDFGDGGAFP EIHLPQYPLL MGKNKSNKPG AKTLPVTVDA QGNVVFDAIV RQNENSRKIV 120
  121 YSQHKDIIPK FLKNEGDLGT VVDEEEELQK EIQETAEETK AAIEKIVNVR LSAAQPSNIA 180
  181 RQSGDSQYIK YKPSQQSSAF NSGAKERIIR MVEMPVDPLD PPKFKHKRVP RASGSPPVPV 240
  241 MHSPPRPVTV KDQQDWKIPP CISNWKNPKG YTIPLDKRLA ADGRGLQDVQ INDNFAKLSE 300
  301 ALYVAEQKAR EAVSMRSKVQ KEMVMKDKER KEQELRALAQ KARSERTGAA MSMPVSSDRG 360
  361 RSESVDPRGD YDNYDQDRGR EREREEPQET REEREKRIQR EKIREERRRE RERERRLDAK 420
  421 DAAMGKKSKI TRDRDRDISE KVALGMASTG GKGGGEVMYD QRLFNQDKGM DSGFAADDQY 480
  481 NLYDKGLFTA QPTLSTLYKP KKDNDEEMYG NADEQLDKIK NTERFKPDKA FTGASERVGS 540
  541 KRDRPVEFEK EEEQDPFGLE KWVSDLKKGK KPLDKIGSGG TMRASGGGGS SSRDDDHGGS 600
  601 GRTKINFERS DRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] deduced N/A No confident structure predictions are available.
    2 View Details [99..465] PSI-BLAST 11.30103 Heavy meromyosin subfragment
    3 View Details [466..613] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle