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View Structure Prediction Details

Protein: SKIP_ARATH
Organism: Arabidopsis thaliana
Length: 613 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKIP_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971076 - gi|51971076|dbj|BAD44230.1| unknown protein [Arabidopsis thaliana]
433.0 [0..1] [613..1]

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Predicted Domain #1
Region A:
Residues: [1-98]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLNDLPAP KSTTTTYYDH SNDAWFKNRV TESETVKSSS IKFKVVPAYL NRQGLRPKNP  60
   61 EDFGDGGAFP EIHLPQYPLL MGKNKSNKPG AKTLPVTV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [99-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAQGNVVFDA IVRQNENSRK IVYSQHKDII PKFLKNEGDL GTVVDEEEEL QKEIQETAEE  60
   61 TKAAIEKIVN VRLSAAQPSN IARQSGDSQY IKYKPSQQSS AFNSGAKERI IRMVEMPVDP 120
  121 LDPPKFKHKR VPRASGSPPV PVMHSPPRPV TVKDQQDWKI PPCISNWKNP KGYTIPLDKR 180
  181 LAADGRGLQD VQINDNFAKL SEALYVAEQK AREAVSMRSK VQKEMVMKDK ERKEQELRAL 240
  241 AQKARSERTG AAMSMPVSSD RGRSESVDPR GDYDNYDQDR GREREREEPQ ETREEREKRI 300
  301 QREKIREERR RERERERRLD AKDAAMGKKS KITRDRDRDI SEKVALGMAS TGGKGGGEVM 360
  361 YDQRLFN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [466-613]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDKGMDSGFA ADDQYNLYDK GLFTAQPTLS TLYKPKKDND EEMYGNADEQ LDKIKNTERF  60
   61 KPDKAFTGAS ERVGSKRDRP VEFEKEEEQD PFGLEKWVSD LKKGKKPLDK IGSGGTMRAS 120
  121 GGGGSSSRDD DHGGSGRTKI NFERSDRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle