| Protein: | SKIP_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 613 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKIP_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
433.0 | [0..1] | [613..1] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MKSLNDLPAP KSTTTTYYDH SNDAWFKNRV TESETVKSSS IKFKVVPAYL NRQGLRPKNP 60
61 EDFGDGGAFP EIHLPQYPLL MGKNKSNKPG AKTLPVTV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.402 | a.77.1 | DEATH domain |
| View | Download | 0.366 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.257 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.246 | a.39.1 | EF-hand |
|
Region A: Residues: [99-465] |
1 11 21 31 41 51
| | | | | |
1 DAQGNVVFDA IVRQNENSRK IVYSQHKDII PKFLKNEGDL GTVVDEEEEL QKEIQETAEE 60
61 TKAAIEKIVN VRLSAAQPSN IARQSGDSQY IKYKPSQQSS AFNSGAKERI IRMVEMPVDP 120
121 LDPPKFKHKR VPRASGSPPV PVMHSPPRPV TVKDQQDWKI PPCISNWKNP KGYTIPLDKR 180
181 LAADGRGLQD VQINDNFAKL SEALYVAEQK AREAVSMRSK VQKEMVMKDK ERKEQELRAL 240
241 AQKARSERTG AAMSMPVSSD RGRSESVDPR GDYDNYDQDR GREREREEPQ ETREEREKRI 300
301 QREKIREERR RERERERRLD AKDAAMGKKS KITRDRDRDI SEKVALGMAS TGGKGGGEVM 360
361 YDQRLFN
|
| Detection Method: | |
| Confidence: | 11.30103 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [466-613] |
1 11 21 31 41 51
| | | | | |
1 QDKGMDSGFA ADDQYNLYDK GLFTAQPTLS TLYKPKKDND EEMYGNADEQ LDKIKNTERF 60
61 KPDKAFTGAS ERVGSKRDRP VEFEKEEEQD PFGLEKWVSD LKKGKKPLDK IGSGGTMRAS 120
121 GGGGSSSRDD DHGGSGRTKI NFERSDRR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
