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Protein Overview: BBD1_ARATH

General Information:
Name(s) found: BBD1_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 325 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: defense response to fungus [IMP]
    Molecular Function: nuclease activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVQAPVVC PAIRPRQVGA CASLVNYTGL KPRSQFWGNR TKGVKSQGTT TTITLRLCNK  60
   61 SIKCVFSSHS DGNGSTAENF NENDEEYVNS SVVEAVEVKS GADGFMVKMR DGRQLRCVHN 120
  121 NPQGGHLPDY APHPAIVLKM EDGTGLLLPI IVLEMPSVLL MAAMTNVQIA RPTMYQVVKE 180
  181 MVDKMGYEVR LVRVTKRVHE AYFAQLFLSK VGNASECVSF DLRPSDAINI AVRCKIPIQV 240
  241 NKYLAYSDGM RVIESGKIST PAPASDGLLF TEQDRPNGQA CLDTKEFNIL SKMMQAVDEE 300
  301 RYDEAAEWRD KLGQFRAKRN LRKYT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] deduced N/A No confident structure predictions are available.
    2 View Details [117..266] PSI-BLAST 35.69897 CRYSTAL STRUCTURE OF C38A MUTANT OF HYPOTHETICAL PROTEIN (TM0160) FROM THERMOTOGA MARITIMA AT 2.8 A RESOLUTION
    3 View Details [267..325] MSA 4.050996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle