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Protein Overview: gi|25518414, gi|...

General Information:
Name(s) found: gi|5080792 [NCBI NR]
gi|25518414 [NCBI NR]
gi|186478468 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C86275 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|186478468|ref|NP_001117282.1| KH domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 479 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [ISS]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG  60
   61 KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL NHFGDDGELV CPALDALFKV 120
  121 HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR 180
  181 VIKDHLPACA LTLSHDELLL IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ 240
  241 PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA 300
  301 TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV 360
  361 SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR EDEEMVQITG SPDAAMKALT 420
  421 QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] PSI-BLAST 30.0 No description for 2jzxA was found.
    2 View Details [119..479] PSI-BLAST 36.0 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle