YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25518414, gi\|...
Organism:	Arabidopsis thaliana
Length:	479 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25518414, gi|....

Description	E-value	Query Range	Subject Range
gi\|222424209, gi... - gi\|79317957\|ref\|NP_001031044.1\| KH domain-containing protein [Arabidopsis thaliana], gi\|222424209\|db...	241.0	[0..43]	[479..10]
gi\|113205451 - gi\|113205451\|gb\|AAW28569.2\| KH domain containing protein, putative [Solanum demissum]	238.0	[0..2]	[464..1]
gi\|71898659, gi\|... - gi\|71898659\|ref\|ZP_00680829.1\| Polyribonucleotide nucleotidyltransferase [Xylella fastidiosa Ann-1],...	229.0	[0..51]	[476..235]
PNP_CHESB - Polyribonucleotide nucleotidyltransferase OS=Chelativorans sp. (strain BNC1) GN=pnp PE=3 SV=1	229.0	[0..62]	[477..242]
gi\|74177637 - gi\|74177637\|dbj\|BAE38921.1\| unnamed protein product [Mus musculus]	228.0	[0..11]	[429..5]
gi\|61369343 - gi\|61369343\|gb\|AAX43320.1\| heterogeneous nuclear ribonucleoprotein K [synthetic construct]	227.0	[0..11]	[429..5]
PNP_GLUOX - Polyribonucleotide nucleotidyltransferase OS=Gluconobacter oxydans GN=pnp PE=3 SV=1 PNP_GLUOX - Polyribonucleotide nucleotidyltransferase OS=Gluconobacter oxydans (strain 621H) GN=pnp PE=3 SV=1	227.0	[0..100]	[457..271]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG  60
   61 KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL NHFGDDGELV CPALDALF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2jzxA
Description:	No description for 2jzxA was found.

Predicted Domain #2

Region A:
Residues: [119-479]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVHDMVVADA DQDDGTDDDN DLGEKQTVTV RMLVPSDQIG CVIGKGGQVI QNLRNDTNAQ  60
   61 IRVIKDHLPA CALTLSHDEL LLIIGEPLVV REALYQVASL LHDNPSRFQH LLLSSSSSSM 120
  121 HQPGAMLMSA ALTSSHRNYA VRRDIADARE FCVCFICPAE NVGGVIGKGG GFINQIRQET 180
  181 GATIRVNTSE TDDDDCIIFI SSKEFYEDQS PAVNAAIRLQ QRCSEKVGKD ANDLAISTRL 240
  241 LVSSSQIGCL IGKGGAVISE MRSVTRANIR ILQKEDVPKI AREDEEMVQI TGSPDAAMKA 300
  301 LTQVILRLRA NSFDMDHGLV LLPTSFPYIP QVTESSSKSK YAKRDDHSKL NSNSKRRNHV 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1e3hA
Description:	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits