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Protein Overview: PABP8_ARATH

General Information:
Name(s) found: PABP8_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||C96534 probable Poly-A Binding Protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18402769|ref|NP_564554.1| PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor [Arabidopsis thaliana] [NCBI NR]
  • gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana] [NCBI NR]
  • gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana] [NCBI NR]
  • Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 [Swiss-Prot]
  • (Q9FXA2) Putative poly-A binding protein [athaliana3702.FASTAC.txt]
  • putative Poly-A Binding Protein [Arabidopsis thaliana]gi|13877633|gb|AAK43894.1| Putative Poly-A Binding Protein [Arabidopsis thaliana]gi|18402769|ref|NP_564554.1| polyadenylate-binding protein, putative / PABP, putative [Arabidopsis thaliana]gi|101204 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Polyadenylate-binding protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18420408-18423421 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative Poly-A Binding Protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative Poly-A Binding Protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PAB8; RNA binding / translation initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: PAB8, PABP8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Poly(A) binding protein 8 OS=Arabidopsis thaliana GN=F14J22.3 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 671 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: translation initiation factor activity [ISS]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ  60
   61 LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS RALNELNFMA LNGRAIRVMY 120
  121 SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY 180
  181 DTDEAAQGAI DKLNGMLLND KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL 240
  241 NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ 300
  301 KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR 360
  361 DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA LAQRKEDRKA RLQAQFSQMR 420
  421 PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN 480
  481 FFMPMMQQGQ QQQQQQQQQQ RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT 540
  541 MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL 600
  601 VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL 660
  661 ASLSLGDNIV P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..216] PSI-BLAST 52.09691 Poly(A)-binding protein
    2 View Details [217..322] PSI-BLAST 16.221849 No description for 2d9pA was found.
    3 View Details [323..409] FFAS03 4.49 No description for 2f3jA was found.
    4 View Details [410..520] deduced N/A No confident structure predictions are available.
    5 View Details [521..671] PSI-BLAST 32.522879 poly(A) binding protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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