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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PABP8_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ  60
   61 LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS RALNELNFMA LNGRAIRVMY 120
  121 SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY 180
  181 DTDEAAQGAI DKLNGMLLND KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL 240
  241 NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ 300
  301 KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR 360
  361 DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA LAQRKEDRKA RLQAQFSQMR 420
  421 PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN 480
  481 FFMPMMQQGQ QQQQQQQQQQ RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT 540
  541 MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL 600
  601 VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL 660
  661 ASLSLGDNIV P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle