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Protein Overview: PP429_ARATH

General Information:
Name(s) found: PP429_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana] [NCBI NR]
  • gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g52630 [NCBI NR]
  • gi|15237212|ref|NP_200075.1| MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1) [Arabidopsis thaliana] [NCBI NR]
  • Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1 [Swiss-Prot]
  • (Q9LTF4) Selenium-binding protein-like [athaliana3702.FASTAC.txt]
  • selenium-binding protein-like [Arabidopsis thaliana]gi|15237212|ref|NP_200075.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:21367601-21369367 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • selenium-binding protein-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MEF1 | mitochondrial RNAediting factor 1 | chr5:21350375-21352141 FORWARD LENGTH=588 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 588 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: cytidine to uridine editing [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNSSAFFV PCHNYNQICD LLLSSARTRS TIKGLQLHGY VVKSGLSLIP LVANNLINFY  60
   61 SKSQLPFDSR RAFEDSPQKS STTWSSIISC FAQNELPWMS LEFLKKMMAG NLRPDDHVLP 120
  121 SATKSCAILS RCDIGRSVHC LSMKTGYDAD VFVGSSLVDM YAKCGEIVYA RKMFDEMPQR 180
  181 NVVTWSGMMY GYAQMGENEE ALWLFKEALF ENLAVNDYSF SSVISVCANS TLLELGRQIH 240
  241 GLSIKSSFDS SSFVGSSLVS LYSKCGVPEG AYQVFNEVPV KNLGIWNAML KAYAQHSHTQ 300
  301 KVIELFKRMK LSGMKPNFIT FLNVLNACSH AGLVDEGRYY FDQMKESRIE PTDKHYASLV 360
  361 DMLGRAGRLQ EALEVITNMP IDPTESVWGA LLTSCTVHKN TELAAFAADK VFELGPVSSG 420
  421 MHISLSNAYA ADGRFEDAAK ARKLLRDRGE KKETGLSWVE ERNKVHTFAA GERRHEKSKE 480
  481 IYEKLAELGE EMEKAGYIAD TSYVLREVDG DEKNQTIRYH SERLAIAFGL ITFPADRPIR 540
  541 VMKNLRVCGD CHNAIKFMSV CTRRVIIVRD NNRFHRFEDG KCSCNDYW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..588] PSI-BLAST 16.522879 No description for 2gw1A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.79

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle