YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: RH48_ARATH

General Information:
Name(s) found: RH48_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|75333533|sp|Q9C8S9.1|RH48_ARATH RecName: Full=Probable DEAD-box ATP-dependent RNA helicase 48 [NCBI NR]
  • pir||C96658 probable RNA helicase F9N12.13 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15221724|ref|NP_176514.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|12324351|gb|AAG52143.1|AC022355_4 putative RNA helicase; 42376-45543 [Arabidopsis thaliana] [NCBI NR]
  • Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis thaliana GN=RH48 PE=3 SV=1 [Swiss-Prot]
  • (Q9C8S9) Putative RNA helicase [athaliana3702.FASTAC.txt]
  • probable RNA helicase F9N12.13 [imported] - Arabidopsis thalianagi|12324351|gb|AAG52143.1| putative RNA helicase; 42376-45543 [Arabidopsis thaliana]gi|15221724|ref|NP_176514.1| DEAD box RNA helicase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DEAD box RNA helicase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DEAD box RNA helicase, putative | chr1:23466949-23470116 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative RNA helicase; 42376-45543 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Probable DEAD-box ATP-dependent RNA helicase 48 [nr-271106-contam.fasta]
  • | Symbols: | DEA(D/H)-box RNA helicase family protein | chr1:23463284-23466451 REVERSE LENGTH=798 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 798 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    ATP-dependent helicase activity [IEA][ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ  60
   61 EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK EHIKTLADRF MKAGAEDFWN 120
  121 ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF 180
  181 KRNESSCDEG DDFDAKKLDT LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND 240
  241 SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV 300
  301 REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS 360
  361 ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV NKVAPIFALI LCPTRELASQ 420
  421 IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS 480
  481 RLMALKLFIV DEADLLLDLG FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD 540
  541 HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT 600
  601 SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI 660
  661 QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD ELKDLPLEPI PAPDLDSIVK 720
  721 HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR 780
  781 RTAVKMGLKG ISGIPIRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 2.263981 View MSA. No confident structure predictions are available.
    2 View Details [186..264] deduced N/A No confident structure predictions are available.
    3 View Details [265..711] PSI-BLAST 86.69897 No description for 2db3A was found.
    4 View Details [712..798] PSI-BLAST 25.522879 Nucleotide excision repair enzyme UvrB


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle