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Protein Overview: PUB9_ARATH

General Information:
Name(s) found: PUB9_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75207393|sp|Q9SRT0.1|PUB9_ARATH RecName: Full=U-box domain-containing protein 9; AltName: Full=Plant U-box protein 9 [NCBI NR]
  • gi|6041837|gb|AAF02146.1|AC009853_6 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19715649|gb|AAL91644.1| AT3g07360/F21O3_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|18397921|ref|NP_566304.1| PUB9 (PLANT U-BOX 9); ubiquitin-protein ligase [Arabidopsis thaliana] [NCBI NR]
  • U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1 [Swiss-Prot]
  • (Q9SRT0) F21O3.7 protein (AT3g07360/F21O3_7) [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|19715649|gb|AAL91644.1| AT3g07360/F21O3_7 [Arabidopsis thaliana]gi|18397921|ref|NP_566304.1| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Armadillo/beta-catenin repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | armadillo/beta-catenin repeat family protein / U-box domain-containing protein | chr3:2354890-2356619 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ubiquitin-protein ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g07360/F21O3_7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: PUB9, ATPUB9 | plant U-box 9 | chr3:2354884-2356613 FORWARD LENGTH=460 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 460 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: protein ubiquitination [IDA]
    Molecular Function: ubiquitin-protein ligase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM  60
   61 AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD KLFIQKWLSS GNRTCPKTQQ 120
  121 VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS 180
  181 SNLQDQKSAA KELRLLTRKG TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL 240
  241 NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI 300
  301 LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA 360
  361 ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA IVILHTICFS DRTKWKEIKE 420
  421 EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..460] PSI-BLAST 43.30103 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle