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Protein Overview: TAF12_ARATH

General Information:
Name(s) found: TAF12_ARATH [Swiss-Prot]
Description(s) found:
Found 17 descriptions.
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  • Transcription initiation factor TFIID subunit 12 OS=Arabidopsis thaliana GN=TAF12 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 539 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    transcription factor TFIID complex [IEA]
    Biological Process: transcription initiation [IEA]
    Molecular Function: transcription initiation factor activity [IEA]
    DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN  60
   61 PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ QHSSYTHFSS ASSPLLSSSS 120
  121 APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG 180
  181 MSEATSNTSS PQVRMMQGTQ GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ 240
  241 SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV 300
  301 NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ 360
  361 GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL GKRSIHELLQ QIDPSEKLDP 420
  421 EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT 480
  481 FRKPLTTDIH KERLAAIKKS VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] FFAS03 0.991 Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
    2 View Details [84..151] deduced N/A No confident structure predictions are available.
    3 View Details [152..222] FFAS03 1.61 No description for 2e45A was found.
    4 View Details [223..401] MSA 5.210996 View MSA. No confident structure predictions are available.
    5 View Details [402..539] PSI-BLAST 33.522879 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  0.581886805340955 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle