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Protein Overview: gi|12325038, gi|...

General Information:
Name(s) found: gi|25406054 [NCBI NR]
gi|15223166 [NCBI NR]
gi|12325038 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||H96728 probable polygalacturonase F24J13.7 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223166|ref|NP_177207.1| polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|12325038|gb|AAG52465.1|AC010796_4 putative polygalacturonase; 18642-16492 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 468 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ  60
   61 YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV LLVPQGRSYL VNATKFDGPC 120
  121 QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK 180
  181 NKSNPCVGAP TALTIYSSSN VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT 240
  241 DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT 300
  301 VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC 360
  361 QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI VLNNINLEGN DGKVEAYCNS 420
  421 AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..468] PSI-BLAST 49.39794 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle