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Protein Overview: NRPBC_ARATH

General Information:
Name(s) found: NRPBC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759147|dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|21618239|gb|AAM67289.1| DNA directed RNA polymerase II polypeptide K [Arabidopsis thaliana] [NCBI NR]
  • gi|19310615|gb|AAL85038.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15237533|ref|NP_198917.1| NRPB12; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [NCBI NR]
  • gi|15028303|gb|AAK76628.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana GN=NRPB12 PE=1 SV=1 [Swiss-Prot]
  • (Q9FLM8) Similarity to metallothionein-I gene transcription activator (Putative metallothionein-I gene transcription activator protein) (Hypothetical protein) (DNA directed RNA polymerase II polypeptide K) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15028303|gb|AAK76628.1| unknown protein [Arabidopsis thaliana]gi|9759147|dbj|BAB09703.1| unnamed protein product [Arabidopsis thaliana]gi|21618239|gb|AAM67289.1| DNA directed RNA polymerase II polypeptide K [Ara [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA-directed RNA polymerases I [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative | chr5:16441278-16442149 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA directed RNA polymerase II polypeptide K [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: NRPB12, NRPD12, NRPE12 | DNA directed RNA polymerase, 7 kDa subunit | chr5:16424050-16424921 FORWARD LENGTH=51 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • DNA directed RNA polymerase II polypeptide K OS=Arabidopsis thaliana GN=NRPB12 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 51 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    DNA-directed RNA polymerase IV complex [IPI]
    DNA-directed RNA polymerase V complex [IDA][IPI]
    DNA-directed RNA polymerase II, core complex [IPI]
    Biological Process: transcription [IEA][ISS]
    Molecular Function: DNA binding [IEA][ISS]
    DNA-directed RNA polymerase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPAPEPVTY VCGDCGQENT LKSGDVIQCR ECGYRILYKK RTRRVVQYEA R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..51] deduced N/A Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle