YRC Public Data Repository - Protein Structure Prediction

Protein:	NRPBC_ARATH
Organism:	Arabidopsis thaliana
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRPBC_ARATH.

Description	E-value	Query Range	Subject Range
gi\|8248885 - gi\|8248885\|gb\|AAB27565.2\| metallothionein-I gene transcription activator [Mus sp.]	92.0	[0..3]	[51..57]
gi\|26359970, gi\|... - gi\|86355514\|ref\|NP_001034457.1\| polymerase (RNA) II (DNA directed) polypeptide K isoform a [Mus musc...	91.0	[0..3]	[51..51]
gi\|76673725 - gi\|76673725\|ref\|XP_601851.2\| PREDICTED: similar to sperm associated antigen 1 (predicted), partial [...	86.0	[0..3]	[45..79]
gi\|115653155, gi... - gi\|115946461\|ref\|XP_001187419.1\| PREDICTED: similar to MGC79127 protein [Strongylocentrotus purpurat...	81.0	[0..3]	[51..16]
gi\|89267208, gi\|... - gi\|89267208\|emb\|CAJ81412.1\| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus tropic... gi\|51593702, gi\|... - gi\|51593702\|gb\|AAH78622.1\| Polr2kb protein [Xenopus laevis], gi\|49117015\|gb\|AAH72756.1\| Polr2ka prot...	80.0	[0..3]	[51..10]
gi\|149066525, gi... - gi\|149066526\|gb\|EDM16399.1\| rCG59437, isoform CRA_a [Rattus norvegicus], gi\|149066525\|gb\|EDM16398.1\|... gi\|149721707 - gi\|149721707\|ref\|XP_001492225.1\| PREDICTED: similar to RNA polymerase II [Equus caballus] POLR3K, POLR2K - polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, polymerase (RNA) III (DNA directed) polype... gi\|114621109 - gi\|114621109\|ref\|XP_001151505.1\| PREDICTED: DNA directed RNA polymerase II polypeptide K [Pan troglo... ENSCJAT000000430... - null, null, null gi\|109087128 - gi\|109087128\|ref\|XP_001096949.1\| PREDICTED: polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa... gi\|123995329, gi... - gi\|208967090\|dbj\|BAG73559.1\| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [synthetic con... CCDS6285.1_1 - null tr\|M3VXF4\|M3VXF4... - RNA polymerase II subunit K OS=Felis catus GN=POLR2K PE=4 SV=1 RPAB4_BOVIN - DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=1 SV=1	79.0	[0..3]	[51..10]
rpc10 - DNA-directed RNA polymerase I, II and III subunit Rpc10 RPAB4_SCHPO - DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 ...	79.0	[0..3]	[51..15]
gi\|47229350 - gi\|47229350\|emb\|CAF99338.1\| unnamed protein product [Tetraodon nigroviridis]	79.0	[0..3]	[51..10]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPAPEPVTY VCGDCGQENT LKSGDVIQCR ECGYRILYKK RTRRVVQYEA R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.823	b.34.9	Tudor/PWWP/MBT

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits