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Protein Overview: gi|55740679, gi|...

General Information:
Name(s) found: gi|55740679 [NCBI NR]
gi|15238875 [NCBI NR]
gi|10177755 [NCBI NR]
Description(s) found:
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  • gi|55740679|gb|AAV63932.1| hypothetical protein At5g48040 [Arabidopsis thaliana] [NCBI NR]
  • gi|15238875|ref|NP_199615.1| ubiquitin thiolesterase [Arabidopsis thaliana] [NCBI NR]
  • gi|10177755|dbj|BAB11068.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • (Q9FI34) Emb|CAB68190.1 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15238875|ref|NP_199615.1| hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58520.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96426.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) | chr [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein At5g48040 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58520.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96426.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) | chr5:19487687-19488955 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr5:19470461-19471729 FORWARD LENGTH=422 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Emb|CAB68190.1 OS=Arabidopsis thaliana GN=At5g48040 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 422 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWLLQRRVS LSTSLCKCRE RFDFFYQQRC GLVNVKLKWV KDRELDAVVV REKHLRAVCN  60
   61 LVSVISASPD LRLPIFKLLP HRGQLGLPQE LKLSAFIRRY PNIFVEHCYW DSAGTSVPCF 120
  121 GLTRETIDLY YEEVDVSRVN ERDVLVRLCK LLMLTCERTL SLHSIDHLRW DLGLPYDYRD 180
  181 SLITKHPDLF SLVKLSSDLD GLKLIHWDEH LAVSQMQLRE DVGNDERMAF PVKFTRGFGL 240
  241 KRKSIEWLQE WQRLPYTSPY VDASHLDPRT DLSEKRNVGV FHELLHLTIG KKTERKNVSN 300
  301 LRKPFALPQK FTKVFERHPG IFYISMKCDT QTVILREAYD RRHLIEKHPL VEVREKFANM 360
  361 MNEGFLDRSR GLYQKSVEAD LEKNNIKTSY PVWSDEEEEL DNNLISGYDS DCPVVEEHKR 420
  421 VF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] deduced N/A No confident structure predictions are available.
    2 View Details [227..422] MSA 1.037953 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle