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Protein Overview: gi|11358630, gi|...

General Information:
Name(s) found: gi|7630057 [NCBI NR]
gi|15239967 [NCBI NR]
gi|11358630 [NCBI NR]
Description(s) found:
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  • gi|7630057|emb|CAB88265.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15239967|ref|NP_196805.1| EMB3011 (embryo defective 3011); ATP binding / RNA helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
  • pir||T49915 pre-mRNA splicing factor ATP-dependent RNA helicase-like protein - Arabidopsis thaliana [NCBI NR]
  • (Q9LXT8) Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [athaliana3702.FASTAC.txt]
  • pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]gi|11358630|pir||T49915 pre-mRNA splicing factor ATP-dependent RNA helicase-like protein - Arabidopsis thalianagi|15239967|ref|NP_196805.1| RNA helicase, putative [Ar [nrdb_11152004_Chlamydomonas]
  • RNA helicase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA helicase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: EMB3011 | EMB3011 (EMBRYO DEFECTIVE 3011); RNA helicase | chr5:4122750-4128663 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • EMB3011; ATP binding / ATP-dependent helicase/ RNA helicase/ helicase/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1226 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: embryonic development ending in seed dormancy [NAS]
    Molecular Function: nucleic acid binding [IEA]
    ATP binding [IEA]
    RNA helicase activity [ISS]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV  60
   61 PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR EKSSRSQSAQ ESTVTTENAG 120
  121 TSDVVAIGIE KNIGVTEVKL RGQDRETLMM RWITTDGGNL IANLTETITE KSVGDTIAIG 180
  181 GLQDEWERSP HGDRGSSYSR RPQPSPSPML AAASPDARLA SPWLDTPRST MSSASPWDMG 240
  241 APSPIPIRAS GSSIRSSSSR YGGRSNQLAY SREGDLTNEG HSDEDRSQGA EEFKHEITET 300
  301 MRVEMEYQSD RAWYDTDEGN SLFDADSASF FLGDDASLQK KETELAKRLV RRDGSKMSLA 360
  361 QSKKYSQLNA DNAQWEDRQL LRSGAVRGTE VQTEFDSEEE RKAILLVHDT KPPFLDGRVV 420
  421 YTKQAEPVMP VKDPTSDMAI ISRKGSGLVK EIREKQSANK SRQRFWELAG SNLGNILGIE 480
  481 KSAEQIDADT AVVGDDGEVD FKGEAKFAQH MKKGEAVSEF AMSKTMAEQR QYLPIFSVRD 540
  541 ELLQVIRENQ VIVVVGETGS GKTTQLTQDG YTINGIVGCT QPRRVAAMSV AKRVSEEMET 600
  601 ELGDKIGYAI RFEDVTGPNT VIKYMTDGVL LRETLKDSDL DKYRVVVMDE AHERSLNTDV 660
  661 LFGILKKVVA RRRDFKLIVT SATLNAQKFS NFFGSVPIFN IPGRTFPVNI LYSKTPCEDY 720
  721 VEAAVKQAMT IHITSPPGDI LIFMTGQDEI EAACFSLKER MEQLVSSSSR EITNLLILPI 780
  781 YSQLPADLQA KIFQKPEDGA RKCIVATNIA ETSLTVDGIY YVIDTGYGKM KVFNPRMGMD 840
  841 ALQVFPISRA ASDQRAGRAG RTGPGTCYRL YTESAYLNEM LPSPVPEIQR TNLGNVVLLL 900
  901 KSLKIDNLLD FDFMDPPPQE NILNSMYQLW VLGALNNVGG LTDLGWKMVE FPLDPPLAKM 960
  961 LLMGERLDCI DEVLTIVSML SVPSVFFRPK ERAEESDAAR EKFFVPESDH LTLLNVYQQW1020
 1021 KEHDYRGDWC NDHYLQVKGL RKAREVRSQL LDILKQLKIE LRSCGPDWDI VRKAICSAYF1080
 1081 HNSARLKGVG EYVNCRTGMP CHLHPSSALY GLGYTPDYVV YHELILTTKE YMQCATSVEP1140
 1141 HWLAELGPMF FSVKDSDTSM LEHKKKQKEE KSGMEEEMEK LRRDQVESEL RSKERERKKR1200
 1201 AKQQQQISGP GLKKGTTFLR PKKLGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] MSA 2.104995 View MSA. No confident structure predictions are available.
    2 View Details [118..234] deduced N/A No confident structure predictions are available.
    3 View Details [235..291] deduced N/A No confident structure predictions are available.
    4 View Details [292..499] deduced N/A No confident structure predictions are available.
    5 View Details [500..885] PSI-BLAST 68.69897 No description for 2hxyA was found.
    6 View Details [886..1052] FFAS03 1.35 No description for 2v8oA was found.
    7 View Details [1053..1226] MSA 1.606979 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle