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Protein Overview: gi|6522574, gi|1...

General Information:
Name(s) found: gi|6522574 [NCBI NR]
gi|41619282 [NCBI NR]
gi|15229055 [NCBI NR]
gi|11274007 [NCBI NR]
Description(s) found:
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  • gi|6522574|emb|CAB62018.1| myb-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|41619282|gb|AAS10066.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15229055|ref|NP_190461.1| AtMYB45 (myb domain protein 45); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||T46138 myb-like protein - Arabidopsis thaliana [NCBI NR]
  • (Q9SMT1) Myb-like protein [athaliana3702.FASTAC.txt]
  • myb-like protein [Arabidopsis thaliana]gi|11274007|pir||T46138 myb-like protein - Arabidopsis thalianagi|15229055|ref|NP_190461.1| myb family transcription factor (MYB45) [Arabidopsis thaliana]gi|41619282|gb|AAS10066.1| MYB transcription factor [Arabid [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB45) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtMYB45 | AtMYB45 (myb domain protein 45); DNA binding / transcription factor | chr3:18150377-18151546 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • myb-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AtMYB45, MYB45 | myb domain protein 45 | chr3:18139392-18140561 FORWARD LENGTH=261 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=T2J13.240 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 261 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    response to salicylic acid stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFKSEKSNR EMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPLQA GLQRNGKSCR  60
   61 LRWVNYLRPG LKKSLFTKQE ETILLSLHSM LGNKWSQISK FLPGRTDNEI KNYWHSNLKK 120
  121 GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD 180
  181 HSLLMDQSPQ KSSYVQNLVL PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE 240
  241 FCTSFSDNFL FDGLINELRP M

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..183] PSI-BLAST 36.522879 c-Myb, DNA-binding domain
    2 View Details [184..261] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle