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Protein Overview: gi|16226753, gi|...

General Information:
Name(s) found: gi|4512702 [NCBI NR]
gi|25411973 [NCBI NR]
gi|22137162 [NCBI NR]
gi|16226753 [NCBI NR]
gi|15225344 [NCBI NR]
gi|13605895 [NCBI NR]
Description(s) found:
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  • gi|4512702|gb|AAD21755.1| putative WD-40 repeat protein [Arabidopsis thaliana] [NCBI NR]
  • pir||H84587 probable WD-40 repeat protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|22137162|gb|AAM91426.1| At2g20330/F11A3.12 [Arabidopsis thaliana] [NCBI NR]
  • gi|16226753|gb|AAL16252.1|AF428322_1 At2g20330/F11A3.12 [Arabidopsis thaliana] [NCBI NR]
  • gi|15225344|ref|NP_179623.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13605895|gb|AAK32933.1|AF367346_1 At2g20330/F11A3.12 [Arabidopsis thaliana] [NCBI NR]
  • (Q9SK69) Putative WD-40 repeat protein (AT2G20330/F11A3.12) [athaliana3702.FASTAC.txt]
  • At2g20330/F11A3.12 [Arabidopsis thaliana]gi|4512702|gb|AAD21755.1| putative WD-40 repeat protein [Arabidopsis thaliana]gi|13605895|gb|AAK32933.1| At2g20330/F11A3.12 [Arabidopsis thaliana]gi|16226753|gb|AAL16252.1| At2g20330/F11A3.12 [Arabidopsis thalia [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | transducin family protein / WD-40 repeat family protein | chr2:8779969-8782599 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative WD-40 repeat protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g20330/F11A3.12 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8772888-8775518 REVERSE LENGTH=648 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g20330/F11A3.12 OS=Arabidopsis thaliana GN=At2g20330 PE=2 SV=1 [ARATH-contam.fasta]
  • At2g20330/F11A3.12 OS=Arabidopsis thaliana GN=At2g20330 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 648 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDELEGLRA HFPVSFGKTS KVSASTEAIH SATRRTDVAN DAGVSSDITT KKPDSDKSGF  60
   61 PSLSSSSQTW LRSVRGPNRN PNSSGDVAMG PPPPPSSKRT QEEEEEDEEV MMGPPPPPKG 120
  121 LGNINDSDDE GDMIGPPPPP PAARDSDEDS DDDDDNDNEE NRYQIPLSNE IQLKGHTKIV 180
  181 SSLAVDSAGA RVLSGSYDYT VRMYDFQGMN SRLQSFRQIE PSEGHQVRSV SWSPTSGQFL 240
  241 CVTGSAQAKI FDRDGLTLGE FMKGDMYIRD LKNTKGHICG LTCGEWHPRT KETVLTSSED 300
  301 GSLRIWDVNN FLSQTQVIKP KLARPGRVPV TTCAWDRDGK RIAGGVGDGS IQIWSLKPGW 360
  361 GSRPDIYVGK AHTDDITSVK FSSDGRILLS RSFDGSLKVW DLRQMKEALK VFEGLPNYYP 420
  421 QTNVAFSPDE QIILTGTSVE KDSTTGGLLC FYDRTKLEIV QKVGISPTSS VVQCAWHPRL 480
  481 NQIFATSGDK SQGGTHILYD PSQSERGACV CVARAPRKKS VDDYQPEPVI HNPHALPLFR 540
  541 DAPSRKRERE KALKDPMKSH KPEIPMTGPG HGGRVGTTGS GLLTQYLLKQ GGMIKETWME 600
  601 EDPREAILKY AEVAVKDPKF IAPAYSQTQP KTIFAKSDDE EEEGDTKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] FFAS03 1.03 Crystal structure of APC35702, a hypothetical protein from Bacillus stearothermophilus
    2 View Details [74..135] PSI-BLAST 54.0 Tup1, C-terminal domain
    3 View Details [136..263] PSI-BLAST 70.522879 No description for 2gnqA was found.
    4 View Details [264..500] FFAS03 6.4 No description for 2gnqA was found.
    5 View Details [501..648] PSI-BLAST 49.221849 Homology Model of Yeast RACK1 Protein fitted into 11.7A cryo-EM map of Yeast 80S Ribosome


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle