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Protein Overview: LSM3B_ARATH

General Information:
Name(s) found: LSM3B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana] [NCBI NR]
  • pir||D96797 Sm-like protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15223768|ref|NP_177812.1| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana] [NCBI NR]
  • Sm-like protein LSM3B OS=Arabidopsis thaliana GN=LSM3B PE=1 SV=1 [Swiss-Prot]
  • (Q9C6K5) Sm-like protein [athaliana3702.FASTAC.txt]
  • Sm-like protein [Arabidopsis thaliana]gi|25406475|pir||D96797 Sm-like protein [imported] - Arabidopsis thalianagi|12322228|gb|AAG51149.1| Sm-like protein [Arabidopsis thaliana]gi|15223768|ref|NP_177812.1| small nuclear ribonucleoprotein, putative / snR [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr1:28859488-28860531 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Sm-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g76860 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g76860 OS=Arabidopsis thaliana GN=F7O12.3 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 98 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    small nucleolar ribonucleoprotein complex [ISS]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE  60
   61 IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 21.522879 B core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle