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Protein Overview: ATB53_ARATH

General Information:
Name(s) found: ATB53_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|89111916|gb|ABD60730.1| At5g66700 [Arabidopsis thaliana] [NCBI NR]
  • gi|8843728|dbj|BAA97276.1| homeodomain transcription factor-like [Arabidopsis thaliana] [NCBI NR]
  • gi|75264280|sp|Q9LVR0.1|ATB53_ARATH RecName: Full=Homeobox-leucine zipper protein ATHB-53; AltName: Full=Homeodomain transcription factor ATHB-53; AltName: Full=HD-ZIP protein ATHB-53 [NCBI NR]
  • gi|56384941|gb|AAV85903.1| homeodomain protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240052|ref|NP_201471.1| HB53; DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1 [Swiss-Prot]
  • (Q9LVR0) Homeodomain transcription factor-like [athaliana3702.FASTAC.txt]
  • homeodomain transcription factor-like [Arabidopsis thaliana]gi|15240052|ref|NP_201471.1| homeobox-leucine zipper family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Homeobox-leucine zipper family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HB-8, ATHB53, HB53 | HB53 (homeobox-8); DNA binding / transcription factor | chr5:26651632-26652988 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • homeodomain protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • HB53; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g66700 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • homeodomain transcription factor-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HB53, HB-8, ATHB53 | homeobox 53 | chr5:26634406-26635762 FORWARD LENGTH=228 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 228 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: root development [TAS]
    regulation of transcription, DNA-dependent [ISS]
    response to auxin stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHGRLMDDQ MMLGSQVYPY TTQPQNSHCI IVNQIDGGEE SKPVKRRRKR RSKGSSATNE  60
   61 EDVAEIGGML RKRKLTDEQV NMLEYSFGNE HKLESGRKEK IAGELGLDPR QVAVWFQNRR 120
  121 ARWKNKKLEE EYAKLKNHHD NVVLGQCQLE SQILKLTEQL SEAQSEIRKL SERLEEMPTN 180
  181 SSSSSLSVEA NNAPTDFELA PETNYNIPFY MLDNNYLQSM EYWDGLYV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..141] PSI-BLAST 20.30103 Homeobox protein hox-b1
    2 View Details [142..228] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle