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Protein Overview: gi|6714390, gi|1...

General Information:
Name(s) found: gi|6714390 [NCBI NR]
gi|15230043 [NCBI NR]
Description(s) found:
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  • gi|6714390|gb|AAF26079.1|AC012393_5 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15230043|ref|NP_187228.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9M9L9) F10A16.6 protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|15230043|ref|NP_187228.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | catalytic/ cobalamin binding | chr3:1710334-1712171 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54300.1); Has 105 Blast hits to 105 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr3:1710328-1712165 REVERSE LENGTH=410 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F10A16.6 protein OS=Arabidopsis thaliana GN=F10A16.6 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 410 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pollen tube development [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMKRSREES QGGGNHNRFV DEGPRLNLPL TKTPELINKI ESYLKVHYTC PHQQTENSSK  60
   61 TSTLPKSPEK LKAMNFPIST IKIGDCVFVA KNPDDIVAKF YFAKKKLLWE FLFGEPVANM 120
  121 PRLKSKIEIQ WNDVSSFEES INSRDETGIL KIELKKRPTF FTETNPQAGK HTQWKQLDYD 180
  181 FTGDQASYYR RHTLHFPPGV LQKNLEKLLT DSFWSKLYKV PFPVHESLYF DIGFENNNSS 240
  241 NGHSKTVGFN VNNGLQHDFS QVRDLKERKK IITLIGIGGV GEGEGNFSMA NGGWQRNSYS 300
  301 HVNSLNYNTD NGLLGMQAIP PSSQVANEHY NNTQNDYTGS QFGYRMNQDE IQKMQRIGKI 360
  361 LESQAYAVPD TQTKLTSSGM NNGPMYPPAG SYLESRLLEE WYEHTRRFQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..268] MSA 3.027966 View MSA. No confident structure predictions are available.
    2 View Details [269..410] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle