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Protein Overview: gi|25511671, gi|...

General Information:
Name(s) found: gi|25511671 [NCBI NR]
gi|22022524 [NCBI NR]
gi|15217815 [NCBI NR]
gi|12323002 [NCBI NR]
Description(s) found:
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  • pir||C86406 88.6K hypothetical protein F13K9.16 - Arabidopsis thaliana [NCBI NR]
  • gi|22022524|gb|AAM83220.1| At1g28060/F13K9_16 [Arabidopsis thaliana] [NCBI NR]
  • gi|15217815|ref|NP_174127.1| small nuclear ribonucleoprotein family protein / snRNP family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12323002|gb|AAG51492.1|AC069471_23 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9C7E7) Hypothetical protein (At1g28060/F13K9_16) [athaliana3702.FASTAC.txt]
  • At1g28060/F13K9_16 [Arabidopsis thaliana]gi|25511671|pir||C86406 88.6K hypothetical protein F13K9.16 - Arabidopsis thalianagi|12323002|gb|AAG51492.1| hypothetical protein [Arabidopsis thaliana]gi|15217815|ref|NP_174127.1| small nuclear ribonucleoprotei [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Small nuclear ribonucleoprotein family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | small nuclear ribonucleoprotein family protein / snRNP family protein | chr1:9779154-9782473 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g28060/F13K9_16 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pre-mRNA-splicing factor 3 | chr1:9779167-9782486 FORWARD LENGTH=786 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g28060/F13K9_16 OS=Arabidopsis thaliana GN=F13K9.16 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 786 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKERYSRSH RDDRDRDSSP DHSPQREGGR RRDRDVDSKR RDSDHYRSSR RGDREDERDR  60
   61 TKDRRGRSVE RGEREGSRDR EKHHHERSHE GSKEKESRSK RKDREEENGA RDGKKKSRFA 120
  121 DGNGERRSRF EDVAIEVENK DAQVSEGSGA TNPTSGVTMG ASTYSSIPSE ASAAPSQTLL 180
  181 TKVSSISTTD ENKASVVRSH EVPGKSSTDG RPLSTAGKSS ANLPLDSSAL AAKARKALQL 240
  241 QKGLADRLKN LPLLKKATKP TSEGSPHTRV PPSTTTPAVS TGTSFASTLP HTGLAGFGSI 300
  301 ANIEAVKRAQ ELAANMGFHQ DREFAPVINL FPGQAPSDMT VAQRPEKPPV LRVDALGREI 360
  361 DEHGNVISVT KPSNLSTLKV NINKKKKDAF QILKPQLEAD LKENPYFDTR MGIDEKKILR 420
  421 PKRMSFQFVE EGKWTRDAEN LKFKSHFGEA KAKELKVKQA QLAKANDDIN PNLIEVSERV 480
  481 PRKEKPKEPI PDVEWWDANV LTNGEYGEIT DGTITESHLK IEKLTHYIEH PRPIEPPAEA 540
  541 APPPPQPLKL TKKEQKKLRT QRRLAKEKEK QEMIRQGLLE PPKAKVKMSN LMKVLGSEAT 600
  601 QDPTKLEKEI RTAAAEREQA HTDRNAARKL TPAEKREKKE RKLFDDPTTV ETIVSVYKIK 660
  661 KLSHPKTRFK VEMNARENRL TGCSVMTDEM SVVVVEGKSK AIKRYGKLMM KRINWEEAER 720
  721 KEGNEDEEEE VNGGNKCWLV WQGSIGKPSF HRFHVHECVT ESTAKKVFMD AGVVHYWDLA 780
  781 VNYSDD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] MSA 5.182996 View MSA. No confident structure predictions are available.
    2 View Details [224..371] deduced N/A No confident structure predictions are available.
    3 View Details [372..649] PSI-BLAST 3.30103 Heavy meromyosin subfragment
    4 View Details [650..786] FFAS03 1.38 No description for 2iygA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle