Protein Overview: gi|42568351, gi|...

General Information:
Name(s) found:	gi\|42568351 [NCBI NR] gi\|10177579 [NCBI NR]
Description(s) found: Found 10 descriptions. SHOW ALL	gi\|42568351\|ref\|NP_568663.2\| 16S rRNA processing protein RimM family [Arabidopsis thaliana] [NCBI NR] gi\|10177579\|dbj\|BAB10810.1\| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
Organism:	Arabidopsis thaliana
Length:	653 amino acids
Gene Ontology:
Cellular Component:	chloroplast [IDA]
Biological Process:	metabolic process [IEA] ribosome biogenesis [ISS] rRNA processing [IEA][ISS]
Molecular Function:	nucleotidyltransferase activity [IEA] ribosome binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL  60
   61 TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP NTDFPDLRFS KPGRRWLKQQ 120
  121 LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF 180
  181 YSRDLVGMRV LLKETGQLVG TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV 240
  241 DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC 300
  301 EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR 360
  361 VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK VSICLVLNDH ENEEPEGENG 420
  421 VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE 480
  481 ETLPVVCSSP EEPKKHKILM KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH 540
  541 SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE 600
  601 AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
structural constituent of ribosome	1.29091534523853	bayes_pls_golite062009
structural molecule activity	1.00956887854211	bayes_pls_golite062009
nucleic acid binding	0.69717198388911	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.26589532866146	bayes_pls_golite062009
translation regulator activity	0.26526765298916	bayes_pls_golite062009
catalytic activity	0.197445126304941	bayes_pls_golite062009
translation initiation factor activity	0.188806956279739	bayes_pls_golite062009
binding	0.0862020085166608	bayes_pls_golite062009

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
nucleotidyltransferase activity	0.80808530959278	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009

Source: Reynolds et al. 2008. Manuscript submitted

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..279]	PSI-BLAST	51.0	Crystal structure of 16S rRNA processing protein from Pseudomonas aeruginosa at 2.46 A resolution
2	View Details	[280..653]	PSI-BLAST	106.0	Crystal structure of UDP-N-acetylglucosamine pyrophosphorylase (Agx2) from Mus musculus at 2.50 A resolution

Protein Overview: gi|42568351, gi|...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: