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Protein Overview: gi|25406575, gi|...

General Information:
Name(s) found: gi|3834309 [NCBI NR]
gi|25406575 [NCBI NR]
gi|15450842 [NCBI NR]
gi|15219200 [NCBI NR]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • gi|3834309|gb|AAC83025.1| Strong similarity to glycoprotein EP1 gb|L16983 Daucus carota and a member of S locus glycoprotein family PF|00954. ESTs gb|F13813, gb|T21052, gb|R30218 and gb|W43262 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||H96817 hypothetical protein F9K20.10 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15450842|gb|AAK96692.1| Strong similarity to glycoprotein EP1 [Arabidopsis thaliana] [NCBI NR]
  • gi|15219200|ref|NP_178006.1| curculin-like (mannose-binding) lectin family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 441 amino acids

    Gene Ontology:
    Cellular Component: cell wall [IDA]
    apoplast [IDA]
    plant-type cell wall [IDA]
    plasma membrane [IDA]
    Biological Process: NONE FOUND
    Molecular Function: sugar binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSITLALC FTLSIFLIGS QAKVPVDDQF RVVNEGGYTD YSPIEYNPDV RGFVPFSDNF  60
   61 RLCFYNTTPN AYTLALRIGN RVQESTLRWV WEANRGSPVK ENATLTFGED GNLVLAEADG 120
  121 RLVWQTNTAN KGAVGIKILE NGNMVIYDSS GKFVWQSFDS PTDTLLVGQS LKLNGRTKLV 180
  181 SRLSPSVNTN GPYSLVMEAK KLVLYYTTNK TPKPIAYFEY EFFTKITQFQ SMTFQAVEDS 240
  241 DTTWGLVMEG VDSGSKFNVS TFLSRPKHNA TLSFIRLESD GNIRVWSYST LATSTAWDVT 300
  301 YTAFTNADTD GNDECRIPEH CLGFGLCKKG QCNACPSDKG LLGWDETCKS PSLASCDPKT 360
  361 FHYFKIEGAD SFMTKYNGGS STTESACGDK CTRDCKCLGF FYNRKSSRCW LGYELKTLTR 420
  421 TGDSSLVAYV KAPNANKKST L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] PSI-BLAST 17.69897 Lectin (agglutinin)
    2 View Details [98..307] PSI-BLAST 13.30103 Fetuin-binding protein Scafet precursor
    3 View Details [308..441] FFAS03 0.974 Merozoite surface protein 1 (MSP-1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • carbohydrate binding
    		•  1.06384882147532 bayes_pls_golite062009
  • binding
    		•  0.911808444515266 bayes_pls_golite062009
  • protein binding
    		•  0.297172869337445 bayes_pls_golite062009
    3
    Term Confidence Notes
  • receptor binding
    		•  2.91363264957545 bayes_pls_golite062009
  • growth factor activity
    		•  1.74301649284252 bayes_pls_golite062009
  • binding
    		•  1.53051861957527 bayes_pls_golite062009
  • protein binding
    		•  1.25147639475774 bayes_pls_golite062009
  • heparin binding
    		•  0.755628188530468 bayes_pls_golite062009
  • glycosaminoglycan binding
    		•  0.705807091815485 bayes_pls_golite062009
  • polysaccharide binding
    		•  0.554253451758832 bayes_pls_golite062009
  • pattern binding
    		•  0.419803830355842 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle