YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15220536, gi|...

General Information:
Name(s) found: gi|91806047 [NCBI NR]
gi|15220536 [NCBI NR]
gi|11072029 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|91806047|gb|ABE65752.1| RNA-binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15220536|ref|NP_176943.1| TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|11072029|gb|AAG28908.1|AC008113_24 F12A21.10 [Arabidopsis thaliana] [NCBI NR]
  • (Q9FXE0) F12A21.10 [athaliana3702.FASTAC.txt]
  • F12A21.10 [Arabidopsis thaliana]gi|15220536|ref|NP_176943.1| RNA-binding protein, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA-binding protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: TEL2 | TEL2 (TERMINAL EAR1-LIKE 2); RNA binding | chr1:25411706-25413816 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • F12A21.10 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA-binding protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • TEL2 (TERMINAL EAR1-LIKE 2); RNA binding / nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: TEL2 | terminal EAR1-like 2 | chr1:25408043-25410153 FORWARD LENGTH=527 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • F12A21.10 OS=Arabidopsis thaliana GN=TEL2 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF  60
   61 SLPPPPPPPH LPPTSVTPTR AVMLLQVPAT VTETSLRRDM ELFGEVRGVQ MERAHEGIVI 120
  121 FHFYNLINSQ RAFNEIRYRH MQQQEQQQHF HFTTARGLVS GHSLWAHFVF PQLNAVPEGN 180
  181 NQGSLVIMNL EPTVSSSTLR HIFQVYGEVK QVRETPCKRE QRFVEFFDVR DAAKALRVMN 240
  241 GKVISGKPMV IQFSRPGGLT KKLFFASHFH KNFIFNNEHH YYPPPPPPSR MVKSDILMYK 300
  301 QQQKKKKKKY VKKNLGDPYF MINENAITGG EFRDGRTTVM IKNIPNKYTQ KLLLKMLDTH 360
  361 CKDCNQSVIK EGNKTPMSSY DFVYLPIDFS NKSNVGYGFV NMTSPEAVWR LYKSFHNQHW 420
  421 RDFTTTRKIC EVTYARIQGL ESLREHFKNV RLAGVEIDEY MPVVFSPPRD GRLSPEPVAI 480
  481 VDPWDKPVDD EDRCCKSRDG FVVSDKKMVG SDGCGFCLSE RIENGGV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] PSI-BLAST 4.69897 Solution structure of the second RNA binding domain from hypothetical protein BAB23448
    2 View Details [77..273] PSI-BLAST 43.69897 Poly(A)-binding protein
    3 View Details [274..527] FFAS03 4.23 CBP20, 20KDa nuclear cap-binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  0.787118623292657 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0269483316710413 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle