| Protein: | gi|15220536, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 527 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220536, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..70] | [495..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MSVTGPFSHP TNLNPTAPAF FPAINQHQNQ NPSLIPTRFF LPHPPPPPPP PPPPLYFSYF 60
61 SLPPPPPPPH LPPTSV
|
| Detection Method: |  |
| Confidence: | 4.69897 |
| Match: | 1whxA |
| Description: | Solution structure of the second RNA binding domain from hypothetical protein BAB23448 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [77-273] |
1 11 21 31 41 51
| | | | | |
1 TPTRAVMLLQ VPATVTETSL RRDMELFGEV RGVQMERAHE GIVIFHFYNL INSQRAFNEI 60
61 RYRHMQQQEQ QQHFHFTTAR GLVSGHSLWA HFVFPQLNAV PEGNNQGSLV IMNLEPTVSS 120
121 STLRHIFQVY GEVKQVRETP CKREQRFVEF FDVRDAAKAL RVMNGKVISG KPMVIQFSRP 180
181 GGLTKKLFFA SHFHKNF
|
| Detection Method: | |
| Confidence: | 43.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [274-527] |
1 11 21 31 41 51
| | | | | |
1 IFNNEHHYYP PPPPPSRMVK SDILMYKQQQ KKKKKKYVKK NLGDPYFMIN ENAITGGEFR 60
61 DGRTTVMIKN IPNKYTQKLL LKMLDTHCKD CNQSVIKEGN KTPMSSYDFV YLPIDFSNKS 120
121 NVGYGFVNMT SPEAVWRLYK SFHNQHWRDF TTTRKICEVT YARIQGLESL REHFKNVRLA 180
181 GVEIDEYMPV VFSPPRDGRL SPEPVAIVDP WDKPVDDEDR CCKSRDGFVV SDKKMVGSDG 240
241 CGFCLSERIE NGGV
|
| Detection Method: | |
| Confidence: | 4.23 |
| Match: | 1h2tZ |
| Description: | CBP20, 20KDa nuclear cap-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.787118623292657 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0269483316710413 | bayes_pls_golite062009 |
