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Protein Overview: gi|20197930, gi|...

General Information:
Name(s) found: gi|25289365 [NCBI NR]
gi|20197930 [NCBI NR]
gi|15226529 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • pir||C84529 probable polygalacturonase [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20197930|gb|AAM15318.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15226529|ref|NP_179148.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACISFAFKA LCFCLFFIVV ASRSTVRPKV FNVQRHGAKP DGKTDNANAF TSIWSRACKR  60
   61 ISGSSKIYVP KGTFYLGGVE FVGPCKNPIE FIIDGTLLAP ANPSDIKQDT WINFRYINNL 120
  121 SISGSGTLDG QGKQSWPHND CHTNPNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF 180
  181 SVHHFNITGV TITAPGDSPN TDGIKMGSCS NIQISDTNIG TGDDCIAILS GTTNLNISNV 240
  241 NCGPGHGISV GSLGKSKDEK DVKDLIVRDV IFNGTSDGIR IKTWESSASK ILVSNFVYEN 300
  301 IQMIDVGKPI NIDQKYCPHP PCEHERKGES HVQIQNLKLK NIYGTSKNKV AVNLQCSKIF 360
  361 PCKNVELIDI NIKQNGVKDG SSTSVCENVD GFARGKMFPR IV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..402] PSI-BLAST 39.522879 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle