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Protein Overview: HFA7B_ARATH

General Information:
Name(s) found: HFA7B_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|91806614|gb|ABE66034.1| heat shock transcription factor family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|75311791|sp|Q9M1V5.1|HFA7B_ARATH RecName: Full=Heat stress transcription factor A-7b; Short=AtHsfA7b; AltName: Full=AtHsf-10 [NCBI NR]
  • gi|7523417|emb|CAB86436.1| heat shock transcription factor-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229416|ref|NP_191894.1| AT-HSFA7B; DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • pir||T48124 heat shock transcription factor-like protein - Arabidopsis thaliana [NCBI NR]
  • Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1 [Swiss-Prot]
  • (Q9M1V5) Heat shock transcription factor-like protein [athaliana3702.FASTAC.txt]
  • heat shock transcription factor-like protein [Arabidopsis thaliana]gi|15229416|ref|NP_191894.1| heat shock transcription factor family protein [Arabidopsis thaliana]gi|11277182|pir||T48124 heat shock transcription factor-like protein - Arabidopsis thali [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Heat shock transcription factor family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: HSFA7B, AT-HSFA7B | AT-HSFA7B (Arabidopsis thaliana heat shock transcription factor A7B); DNA binding / transcription factor | chr3:23410443-23411787 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • heat shock transcription factor-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT-HSFA7B; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • heat shock transcription factor family protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: AT-HSFA7B, HSFA7B | winged-helix DNA-binding transcription factor family protein | chr3:23399468-23400812 FORWARD LENGTH=282 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 282 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: response to heat [IEP]
    response to high light intensity [IEP]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSSSSRAR SMPPPVPMEG LQEAGPSPFL TKTFEMVGDP NTNHIVSWNR GGISFVVWDP  60
   61 HSFSATILPL YFKHNNFSSF VRQLNTYGFR KIEAERWEFM NEGFLMGQRD LLKSIKRRTS 120
  121 SSSPPSLNYS QSQPEAHDPG VELPQLREER HVLMMEISTL RQEEQRARGY VQAMEQRING 180
  181 AEKKQRHMMS FLRRAVENPS LLQQIFEQKR DREEAAMIDQ AGLIKMEEVE HLSELEALAL 240
  241 EMQGYGRQRT DGVERELDDG FWEELLMNNE NSDEEEANVK QD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..91] PSI-BLAST 32.39794 SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR
    2 View Details [92..282] PSI-BLAST 26.30103 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle