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Protein Overview: gi|7644370, gi|1...

General Information:
Name(s) found: gi|7644370 [NCBI NR]
gi|6728967 [NCBI NR]
gi|41619226 [NCBI NR]
gi|15233021 [NCBI NR]
gi|105830332 [NCBI NR]
Description(s) found:
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  • gi|7644370|gb|AAF65560.1|AF249310_1 putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|6728967|gb|AAF26965.1|AC018363_10 putative MYB family transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|41619226|gb|AAS10053.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15233021|ref|NP_186944.1| MYB107 (myb domain protein 107); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|105830332|gb|ABF74721.1| At3g02940 [Arabidopsis thaliana] [NCBI NR]
  • (Q9LDI5) Putative transcription factor (Putative MYB family transcription factor) [athaliana3702.FASTAC.txt]
  • putative MYB family transcription factor [Arabidopsis thaliana]gi|7644370|gb|AAF65560.1| putative transcription factor [Arabidopsis thaliana]gi|15233021|ref|NP_186944.1| myb family transcription factor (MYB107) [Arabidopsis thaliana]gi|41619226|gb|AAS1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB107) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: AtMYB107, MYB107 | MYB107 (myb domain protein 107); DNA binding / transcription factor | chr3:662148-663837 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative MYB family transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB107; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g02940 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MYB107, AtMYB107 | myb domain protein 107 | chr3:662141-663830 FORWARD LENGTH=321 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At3g02940 OS=Arabidopsis thaliana GN=MYB107 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 321 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    response to salicylic acid stimulus [IEP]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSPCCDES GLKKGPWTPE EDQKLINHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY  60
   61 LRPDIKRGNF TAEEEQTIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLIQMG 120
  121 IDPVTHRPRT DHLNVLAALP QLLAAANFNN LLNLNQNIQL DATSVAKAQL LHSMIQVLSN 180
  181 NNTSSSFDIH HTTNNLFGQS SFLENLPNIE NPYDQTQGLS HIDDQPLDSF SSPIRVVAYQ 240
  241 HDQNFIPPLI STSPDESKET QMMVKNKEIM KYNDHTSNPS STSTFTQDHQ PWCDIIDDEA 300
  301 SDSYWKEIIE QTCSEPWPFR E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..186] PSI-BLAST 39.39794 c-Myb, DNA-binding domain
    2 View Details [187..321] MSA 2.504996 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle