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Protein Overview: gi|15232654, gi|...

General Information:
Name(s) found: gi|6478939 [NCBI NR]
gi|15232654 [NCBI NR]
Description(s) found:
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  • gi|6478939|gb|AAF14044.1|AC011436_28 putative transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15232654|ref|NP_187547.1| RNA polymerase II transcription factor/ transcription factor/ zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • (Q9SR27) Putative transcription factor [athaliana3702.FASTAC.txt]
  • putative transcription factor [Arabidopsis thaliana]gi|15232654|ref|NP_187547.1| transcription factor IIB (TFIIB) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transcription factor IIB (TFIIB) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • putative transcription factor [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • RNA polymerase II transcription factor/ transcription factor/ zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 600 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVWCNHCVKN VPGIRPYDGA LACNLCGRIL ENFHFSTEVT FVKNAAGQSQ ASGNIVRSVQ  60
   61 SGITSSRERR FRIARDELMN LKDALGIGDE RDDVIVIAAK FFEMAVEQNF TKGRRTELVQ 120
  121 ASCLYLTCRE LNIALLLIDF SSYLRVSVYE LGSVYLQLCE MLYLVENRNY EKLVDPSIFM 180
  181 DRFSNSLLKG KNNKDVVATA RDIIASMKRD WIQTGRKPSG ICGAALYTAA LSHGIKCSKT 240
  241 DIVNIVHICE ATLTKRLIEF GDTDSGNLNV NELRERESHK RSFTMKPTSN KEAVLCMHQD 300
  301 SKPFGYGLCE DCYKDFINVS GGLVGGSNPP AFQRAEKERM EKAAREENEG GISSLNHDEQ 360
  361 LYHLRIYLGC VAEKGEKDKD GAEEHADTSD ESDNFSDISD DEVNGYINNE EETHYKTITW 420
  421 TEMNKDYLEE QAAKEAALKA ASEALKASNS NCPEDARKAF EAAKADAAKS RKEKQQKKAE 480
  481 EAKNAAPPAT AVEAVRRTLD KKRLSSVINY DVLESLFDTS APEKSPKRSK TETDIEKKKE 540
  541 ENKEMKSNEH ENGENEDEDE EDEEEGNVES YDMKTDFQNG EKFYEEDEEE EEDGNDFGLY 600
  601

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..263] PSI-BLAST 54.09691 Transcription factor IIB (TFIIB), core domain
    2 View Details [264..600] PSI-BLAST 3.045757 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle