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Protein Overview: gi|7435400, gi|1...

General Information:
Name(s) found: gi|7435400 [NCBI NR]
gi|7268080 [NCBI NR]
gi|4455305 [NCBI NR]
gi|15236348 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • pir||T05245 polygalacturonase homolog F18A5.150 - Arabidopsis thaliana [NCBI NR]
  • gi|7268080|emb|CAB78418.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|4455305|emb|CAB36840.1| putative polygalacturonase [Arabidopsis thaliana] [NCBI NR]
  • gi|15236348|ref|NP_193112.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 375 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNVQRHGSK SDGKTDNTNV FTSVWNRACR RKSGSSKIYV PKGTFYLGGV EFVGPCKNPI  60
   61 EFLIDGTLLA PANPNNIKQD TWIKFKYIND LSISGSGTLD GQGKQSWPLN DCHKNPNCPK 120
  121 LAMTMGFAFV NNSNIKDITS LNSKMGHFNF FSVHHFNITG VTITAPGNSP NTDGIKMGSC 180
  181 SNIHISNTNI GTGDDCIAIL SGTTNLDISN VNCGPGHGIS VGSLGKNKDE KDVKDLTIRD 240
  241 VIFNGTSDGI RIKTWESSAS KILVSNFLYE NIQMIDVGKP INIDQKYCPH PPCEHEQKGE 300
  301 SHVQIQNLKL KNIYGTSKNK VAVNLQCSKR FPCKNIELID INITNNGLVD SFSTLVCENV 360
  361 DGSVSGKMVP QHCIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..375] PSI-BLAST 36.154902 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle