Protein Overview: C3H2_ARATH

General Information:
Name(s) found:	C3H2_ARATH [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|75268098\|sp\|Q9ZWA1.1\|C3H2_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 2; Short=AtC3H2; AltName: Full=Protein SOMNUS; Short=SOM [NCBI NR] gi\|4204308\|gb\|AAD10689.1\| Hypothetical protein [Arabidopsis thaliana] [NCBI NR] pir\|\|D86168 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR] gi\|15219557\|ref\|NP_171875.1\| SOM (SOMNUS); nucleic acid binding / transcription factor [Arabidopsis thaliana] [NCBI NR] Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana GN=At1g03790 PE=2 SV=1 [Swiss-Prot] (Q9ZWA1) F11M21.28 protein [athaliana3702.FASTAC.txt] hypothetical protein [imported] - Arabidopsis thalianagi\|15219557\|ref\|NP_171875.1\| zinc finger (CCCH-type) family protein [Arabidopsis thaliana]gi\|4204308\|gb\|AAD10689.1\| Hypothetical protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 Zinc finger (CCCH-type) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| zinc finger (CCCH-type) family protein \| chr1:954588-955769 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] Hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta] nucleic acid binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: SOM \| Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr1:954589-955770 FORWARD LENGTH=393 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
Organism:	Arabidopsis thaliana
Length:	393 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA]
Biological Process:	negative regulation of seed germination [IMP] regulation of transcription [TAS]
Molecular Function:	nucleic acid binding [ISS] transcription factor activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVCTEHQM RKPTVEIPPR KLLLSSKSFP SDSSSPRSPR KHNWNKSNKI TSEHEEDNED  60
   61 NNRENKEYCY DSDSDDPYAS DHFRMFEFKI RRCTRSRSHD WTDCPFAHPG EKARRRDPRR 120
  121 FQYSGEVCPE FRRGGDCSRG DDCEFAHGVF ECWLHPIRYR TEACKDGKHC KRKVCFFAHS 180
  181 PRQLRVLPPE NVSGVSASPS PAAKNPCCLF CSSSPTSTLL GNLSHLSRSP SLSPPMSPAN 240
  241 KAAAFSRLRN RAASAVSAAA AAGSMNYKDV LSELVNSLDS MSLAEALQAS SSSPVTTPVS 300
  301 AAAAAFASSC GLSNQRLHLQ QQQPSSPLQF ALSPSTPSYL TNSPQANFFS DDFTPRRRQM 360
  361 NDFTAMTAVR ENTNIEDGSC GDPDLGWVND LLT

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..77]	deduced	N/A	No confident structure predictions are available.
2	View Details	[78..140]	PSI-BLAST	20.09691	Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
3	View Details	[141..202]	FFAS03	3.04	No description for 2e5sA was found.
4	View Details	[203..393]	MSA	6.153996	View MSA. No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.91

Protein Overview: C3H2_ARATH

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: