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View Structure Prediction Details

Protein: C3H2_ARATH
Organism: Arabidopsis thaliana
Length: 393 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for C3H2_ARATH.

Description E-value Query
Range
Subject
Range
gi|28950965, gi|... - gi|28950965|gb|AAO63406.1| At1g03790 [Arabidopsis thaliana], gi|26449538|dbj|BAC41895.1| unknown pro...
265.0 [0..1] [393..1]
gi|26346949 - gi|26346949|dbj|BAC37123.1| unnamed protein product [Mus musculus]
198.0 [0..4] [367..150]
gi|31419634, gi|... - gi|31419634|gb|AAH53362.1| UNK protein [Homo sapiens], gi|12698051|dbj|BAB21844.1| KIAA1753 protein ...
195.0 [0..4] [367..158]
gi|114670515 - gi|114670515|ref|XP_511685.2| PREDICTED: zinc finger CCCH-type domain containing 5 [Pan troglodytes]
195.0 [0..4] [367..190]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVCTEHQM RKPTVEIPPR KLLLSSKSFP SDSSSPRSPR KHNWNKSNKI TSEHEEDNED  60
   61 NNRENKEYCY DSDSDDP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YASDHFRMFE FKIRRCTRSR SHDWTDCPFA HPGEKARRRD PRRFQYSGEV CPEFRRGGDC  60
   61 SRG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.09691
Match: 1rgoA
Description: Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [141-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDCEFAHGVF ECWLHPIRYR TEACKDGKHC KRKVCFFAHS PRQLRVLPPE NVSGVSASPS  60
   61 PA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.04
Match: 2e5sA
Description: No description for 2e5sA was found.

Predicted Domain #4
Region A:
Residues: [203-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKNPCCLFCS SSPTSTLLGN LSHLSRSPSL SPPMSPANKA AAFSRLRNRA ASAVSAAAAA  60
   61 GSMNYKDVLS ELVNSLDSMS LAEALQASSS SPVTTPVSAA AAAFASSCGL SNQRLHLQQQ 120
  121 QPSSPLQFAL SPSTPSYLTN SPQANFFSDD FTPRRRQMND FTAMTAVREN TNIEDGSCGD 180
  181 PDLGWVNDLL T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle