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Protein Overview: NCED5_ARATH

General Information:
Name(s) found: NCED5_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: thylakoid [IDA]
    Biological Process: abscisic acid biosynthetic process [IMP][TAS]
    Molecular Function: 9-cis-epoxycarotenoid dioxygenase activity [TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN  60
   61 YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS KPLPKTVDPR HQISGNYAPV 120
  121 PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS 180
  181 CRFTETERLV QEKQLGSPIF PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG 240
  241 LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL 300
  301 SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF 360
  361 LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF HLWNAWESPE TDEVVVIGSC 420
  421 MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR 480
  481 YAYLAIAEPW PKVSGFAKVD LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF 540
  541 VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] deduced N/A No confident structure predictions are available.
    2 View Details [107..589] PSI-BLAST 118.0 Crystal structure of apocarotenoid cleavage oxygenase from Synechocystis, native enzyme


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle