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Protein Overview: gi|7547107, gi|1...

General Information:
Name(s) found: gi|7547107 [NCBI NR]
gi|15229304 [NCBI NR]
Description(s) found:
Found 7 descriptions.
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  • gi|7547107|gb|AAF63779.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15229304|ref|NP_187098.1| endoribonuclease [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 715 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: biological_process [ND]
    Molecular Function: endoribonuclease activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA  60
   61 ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE VKRQIPSITA VSSGAIASDY 120
  121 QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA 180
  181 FMEPYLLKLK EKYGSNVCGE GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL 240
  241 HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS 300
  301 RAEKHNTFSI CCWLEDSSES SKEDLETVLT ELESQLLKHG YNWQHVLYIH LYISDMSEFA 360
  361 VANETYVKFI TQEKCPFGVP SRSTIELPLV QAGLGKAYIE VLVANDESKR VLHVQSISCW 420
  421 APSCIGPYSQ ATLHQSVLHM AGQLGLDPPT MNLQTEGAIA ELNQALTNSE AIAESFNCSI 480
  481 SSSAILFVVF CSARTKQSER NQLHEKFVTF LGLAKSSRRV QNVLDPMFLY ILVPDLPKRA 540
  541 LVEVKPILYV EEDTDTEDET SRDQSGEGHY SIWGYKPEKW HQDCVQKRVV DGKVCVAVLS 600
  601 ISAELMRKLQ GEEEELEIVS RFCVYLLNKT LSENSFSWQD TTSLRIHFST SIGVSVERLS 660
  661 AIFVSAFREL NEMSDGVKMD SLKEPIFNLV PVLGAGNSSA SLDNIITCEL FALRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..254] PSI-BLAST 70.39794 Crystal Structure of the putative n-type ATP pyrophosphatase from Pyrococcus furiosus, the Northeast Structural Genomics Target PfR23
    2 View Details [255..404] PSI-BLAST 7.522879 Structure of hypothetical protein from Streptococcus pyogenes M1 GAS, member of highly conserved yjgF family of proteins
    3 View Details [405..553] PSI-BLAST 43.0 No description for 2dyyA was found.
    4 View Details [554..715] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.062439821475123 bayes_pls_golite062009
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.242057485683616 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle