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View Structure Prediction Details

Protein: gi|7547107, gi|1...
Organism: Arabidopsis thaliana
Length: 715 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7547107, gi|1....

Description E-value Query
Range
Subject
Range
gi|116116015, gi... - gi|118793862|ref|XP_321119.3| ENSANGP00000018453 [Anopheles gambiae str. PEST], gi|116116015|gb|EAA0...
598.0 [0..1] [703..1]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA  60
   61 ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE VKRQIPSITA VSSGAIASDY 120
  121 QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA 180
  181 FMEPYLLKLK EKYGSNVCGE GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL 240
  241 HPSTFHLEKK GNPD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.39794
Match: 1ru8A
Description: Crystal Structure of the putative n-type ATP pyrophosphatase from Pyrococcus furiosus, the Northeast Structural Genomics Target PfR23
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.062439821475123 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [255-404]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHSPEEESSL VSEVLGDGPN TSDSTRQRDN GIVDLVEHTS NRLHISRAEK HNTFSICCWL  60
   61 EDSSESSKED LETVLTELES QLLKHGYNWQ HVLYIHLYIS DMSEFAVANE TYVKFITQEK 120
  121 CPFGVPSRST IELPLVQAGL GKAYIEVLVA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 2ewcA
Description: Structure of hypothetical protein from Streptococcus pyogenes M1 GAS, member of highly conserved yjgF family of proteins
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.242057485683616 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [405-553]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDESKRVLHV QSISCWAPSC IGPYSQATLH QSVLHMAGQL GLDPPTMNLQ TEGAIAELNQ  60
   61 ALTNSEAIAE SFNCSISSSA ILFVVFCSAR TKQSERNQLH EKFVTFLGLA KSSRRVQNVL 120
  121 DPMFLYILVP DLPKRALVEV KPILYVEED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 2dyyA
Description: No description for 2dyyA was found.

Predicted Domain #4
Region A:
Residues: [554-715]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDTEDETSRD QSGEGHYSIW GYKPEKWHQD CVQKRVVDGK VCVAVLSISA ELMRKLQGEE  60
   61 EELEIVSRFC VYLLNKTLSE NSFSWQDTTS LRIHFSTSIG VSVERLSAIF VSAFRELNEM 120
  121 SDGVKMDSLK EPIFNLVPVL GAGNSSASLD NIITCELFAL RS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle