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Protein Overview: COPE1_ARATH

General Information:
Name(s) found: COPE1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75336896|sp|Q9SA78.1|COPE1_ARATH RecName: Full=Coatomer subunit epsilon-1; AltName: Full=Epsilon-coat protein 1; Short=Epsilon-COP 1 [NCBI NR]
  • gi|4587519|gb|AAD25750.1|AC007060_8 Strong similarity to F19I3.7 gi|3033380 putative coatomer epsilon subunit from Arabidopsis thaliana BAC gb|AC004238. ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T [NCBI NR]
  • pir||F86431 hypothetical protein T5I8.8 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|17104797|gb|AAL34287.1| putative coatomer protein, epsilon subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|15221463|ref|NP_174351.1| coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|13878125|gb|AAK44140.1|AF370325_1 putative coatomer protein, epsilon subunit [Arabidopsis thaliana] [NCBI NR]
  • gi|13194794|gb|AAK15559.1|AF348588_1 putative coatomer protein, epsilon subunit [Arabidopsis thaliana] [NCBI NR]
  • Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1 [Swiss-Prot]
  • (Q9SA78) T5I8.8 protein (Putative coatomer epsilon subunit protein) [athaliana3702.FASTAC.txt]
  • putative coatomer protein, epsilon subunit [Arabidopsis thaliana]gi|17104797|gb|AAL34287.1| putative coatomer protein, epsilon subunit [Arabidopsis thaliana]gi|13878125|gb|AAK44140.1| putative coatomer protein, epsilon subunit [Arabidopsis thaliana]gi| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Coatomer protein epsilon subunit family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | coatomer protein epsilon subunit family protein / COPE family protein | chr1:10858528-10860155 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Strong similarity to F19I3.7 gi|3033380 putative coatomer epsilon subunit from Arabidopsis thaliana BAC gb|AC004238. ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this ge [nr-271106-contam.fasta]
  • protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative coatomer protein, epsilon subunit [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Coatomer epsilon subunit | chr1:10858546-10860173 REVERSE LENGTH=292 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 292 amino acids

    Gene Ontology:
    Cellular Component: plasma membrane [IDA]
    Biological Process: retrograde vesicle-mediated transport, Golgi to ER [IEA][ISS]
    Molecular Function: protein binding [IEA]
    structural molecule activity [IEA]
    protein transporter activity [ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI  60
   61 SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD PTVGNNAIIR LIAGTIFMHE 120
  121 EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN 180
  181 LAVGGSKIQE AYLIFQDFSE KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP 240
  241 ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..292] PSI-BLAST 44.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.09193012129784 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009
  • peroxisome targeting sequence binding
    		•  0.69717675806841 bayes_pls_golite062009
  • syntaxin binding
    		•  0.0598606763736398 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle