| Protein: | COPE1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 292 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COPE1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
228.0 | [0..1] | [274..1056] |
|
Region A: Residues: [1-292] |
1 11 21 31 41 51
| | | | | |
1 MASMAGPDHL FNLRNHFYLG AYQAAINNSE IPNLSQEDIV ERDCLVHRAY IALGSYQLVI 60
61 SEIDEAAATP LQAVKLLAMY LSSPENKEST ISSLREWLAD PTVGNNAIIR LIAGTIFMHE 120
121 EDYNEALKHT HSGGTMDLHA LNVQIFIKMH RSDFAEKQLR VMQQIDEDHT LTQLASAWLN 180
181 LAVGGSKIQE AYLIFQDFSE KYPMTSLILN GKAVCCMHMG NFEEAETLLL EALNKDAKDP 240
241 ETLANLVVCS LHVGKSSSRY LNQLKLSHPE HVLVKRAASA EDNFERALQS FA
|
| Detection Method: |  |
| Confidence: | 44.522879 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.09193012129784 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| signal sequence binding | 1.13935627118933 | bayes_pls_golite062009 |
| peroxisome targeting sequence binding | 0.69717675806841 | bayes_pls_golite062009 |
| syntaxin binding | 0.0598606763736398 | bayes_pls_golite062009 |
