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Protein Overview: APRR1_ARATH

General Information:
Name(s) found: APRR1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9757859|dbj|BAB08493.1| pseudo-response regulator 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|9247020|gb|AAF86252.1|AF272039_1 timing of CAB expression 1 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|7576354|dbj|BAA94547.1| pseudo-response regulator 1 [Arabidopsis thaliana] [NCBI NR]
  • gi|52783243|sp|Q9LKL2.1|APRR1_ARATH RecName: Full=Two-component response regulator-like APRR1; AltName: Full=Pseudo-response regulator 1; AltName: Full=Timing of CAB expression 1; AltName: Full=ABI3-interacting protein 1 [NCBI NR]
  • gi|29028744|gb|AAO64751.1| At5g61380/mfb13_150 [Arabidopsis thaliana] [NCBI NR]
  • pir||T52075 pseudo-response regulator APRR1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20453054|gb|AAM19772.1| AT5g61380/mfb13_150 [Arabidopsis thaliana] [NCBI NR]
  • gi|15240235|ref|NP_200946.1| TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator [Arabidopsis thaliana] [NCBI NR]
  • (Q9LKL2) Two-component response regulator-like APRR1 (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) [Swiss-Prot]
  • Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1 [Swiss-Prot]
  • (Q9LKL2) Timing of CAB expression 1 protein (Pseudo-response regulator 1) (AT5g61380/mfb13_150) [athaliana3702.FASTAC.txt]
  • pseudo-response regulator 1 [Arabidopsis thaliana]gi|9757859|dbj|BAB08493.1| pseudo-response regulator 1 [Arabidopsis thaliana]gi|29028744|gb|AAO64751.1| At5g61380/mfb13_150 [Arabidopsis thaliana]gi|20453054|gb|AAM19772.1| AT5g61380/mfb13_150 [Arabidop [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Two-component response regulator-like APRR1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: APRR1, PRR1, TOC1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator | chr5:24692766-24695402 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • timing of CAB expression 1 protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • pseudo-response regulator 1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Two-component response regulator-like APRR1 (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) [nr-271106-contam.fasta]
  • TOC1 (TIMING OF CAB1 1); transcription regulator [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT5g61380/mfb13_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g61380/mfb13_150 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -containing response regulator protein | chr5:24675540-24678176 FORWARD LENGTH=618 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: circumnutation [IMP]
    regulation of transcription, DNA-dependent [ISS]
    circadian rhythm [IEP][TAS]
    Molecular Function: transcription regulator activity [TAS]
    two-component response regulator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA  60
   61 EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM SRQDEVPVVV KCLKLGAADY 120
  121 LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD 180
  181 RSLRSTNPQR GNLSHQENEW SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH 240
  241 HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG 300
  301 LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS 360
  361 EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT LPTSMESHGR NYQEGNMNIP 420
  421 QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG 480
  481 MTGYPYYHHP MNTSLQHSQM SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF 540
  541 RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE 600
  601 EEEEENRDSS PQDDALGT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..441] PSI-BLAST 63.522879 Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
    2 View Details [442..618] MSA 7.13099 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • signal transducer activity
    		•  2.07885074402355 bayes_pls_golite062009
  • molecular transducer activity
    		•  2.07885074402355 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.53373140048441 bayes_pls_golite062009
  • catalytic activity
    		•  0.470983068319171 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0582794297634999 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle