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Protein Overview: AGD10_ARATH

General Information:
Name(s) found: AGD10_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|75220221|sp|O82171.1|AGD10_ARATH RecName: Full=ADP-ribosylation factor GTPase-activating protein AGD10; AltName: Full=Protein ARF-GAP DOMAIN 10; Short=AtAGD10; AltName: Full=Protein MATERNAL EFFECT EMBRYO ARREST 28; AltName: Full=Protein ROOT AND POLLE [NCBI NR]
  • gi|3668084|gb|AAC61816.1| expressed protein [Arabidopsis thaliana] [NCBI NR]
  • pir||H84765 hypothetical protein At2g35210 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21553727|gb|AAM62820.1| zinc finger protein Glo3-like [Arabidopsis thaliana] [NCBI NR]
  • gi|18403775|ref|NP_565801.1| RPA (ROOT AND POLLEN ARFGAP); ARF GTPase activator/ DNA binding / zinc ion binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110738611|dbj|BAF01231.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • ADP-ribosylation factor GTPase-activating protein AGD10 OS=Arabidopsis thaliana GN=AGD10 PE=2 SV=1 [Swiss-Prot]
  • (O82171) At2g35210 protein (Zinc finger protein Glo3-like) [athaliana3702.FASTAC.txt]
  • zinc finger protein Glo3-like [Arabidopsis thaliana]gi|3668084|gb|AAC61816.1| expressed protein [Arabidopsis thaliana]gi|25408361|pir||H84765 hypothetical protein At2g35210 [imported] - Arabidopsis thalianagi|18403775|ref|NP_565801.1| human Rev interac [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Human Rev interacting-like family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: RPA, AGD10, MEE28 | AGD10/MEE28/RPA (MATERNAL EFFECT EMBRYO ARREST 28); DNA binding | chr2:14843285-14845025 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • zinc finger protein Glo3-like [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • expressed protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RPA, AGD10, MEE28 | root and pollen arfgap | chr2:14836206-14837946 FORWARD LENGTH=395 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 395 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    Biological Process: embryonic development ending in seed dormancy [IMP]
    pollen development [IMP]
    Molecular Function: DNA binding [ISS]
    zinc ion binding [IEA]
    ARF GTPase activator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS  60
   61 FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK TEAKYTSRAA DLYKQILAKE 120
  121 VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV 180
  181 KKPLGAKKTG KTGGLGARKL TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY 240
  241 ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK 300
  301 KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL 360
  361 LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..129] PSI-BLAST 43.30103 No description for 2iqjA was found.
    2 View Details [130..205] deduced N/A No confident structure predictions are available.
    3 View Details [206..395] MSA 2.223995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle