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View Structure Prediction Details

Protein: AGD10_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGD10_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268541, gi|7... - pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana, gi|7268541|emb|CAB78791.1| putativ...
269.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS  60
   61 FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK TEAKYTSRAA DLYKQILAKE 120
  121 VAKSKAEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.30103
Match: 2iqjA
Description: No description for 2iqjA was found.

Predicted Domain #2
Region A:
Residues: [130-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDLPPSPPDS TQVPNGLSSI KTSEALKESN TLKQQEKPDV VPVSPRISRS VKKPLGAKKT  60
   61 GKTGGLGARK LTTKSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [206-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLYDQKPEE SVIIQATSPV SAKSARSSFS SRFDYADNVQ NREDYMSPQV VSHVAPPKSS  60
   61 GFFEEELEMN GGRFQKKPIT SSSKLQIQET DEARKKFTNA KSISSAQYFG NDNNSADLEA 120
  121 KSSLKKFSGS SAISSADLFG DGDGDFPLDL TAGDLLNRLS LQAQQDISSL KNMAEETKKK 180
  181 LGSVASSLWV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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