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View Structure Prediction Details

Protein: AGD10_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGD10_ARATH.

Description E-value Query
Range
Subject
Range
gi|7268541, gi|7... - pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana, gi|7268541|emb|CAB78791.1| putativ...
269.0 [0..1] [394..1]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS  60
   61 FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK TEAKYTSRAA DLYKQILAKE 120
  121 VAKSKAEEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.30103
Match: 2iqjA
Description: No description for 2iqjA was found.

Predicted Domain #2
Region A:
Residues: [130-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDLPPSPPDS TQVPNGLSSI KTSEALKESN TLKQQEKPDV VPVSPRISRS VKKPLGAKKT  60
   61 GKTGGLGARK LTTKSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [206-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLYDQKPEE SVIIQATSPV SAKSARSSFS SRFDYADNVQ NREDYMSPQV VSHVAPPKSS  60
   61 GFFEEELEMN GGRFQKKPIT SSSKLQIQET DEARKKFTNA KSISSAQYFG NDNNSADLEA 120
  121 KSSLKKFSGS SAISSADLFG DGDGDFPLDL TAGDLLNRLS LQAQQDISSL KNMAEETKKK 180
  181 LGSVASSLWV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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