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Protein Overview: PATL1_ARATH

General Information:
Name(s) found: PATL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|78099065|sp|Q56WK6.2|PATL1_ARATH RecName: Full=Patellin-1 [NCBI NR]
  • pir||H96744 probable cytosolic factor T9N14.1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21280861|gb|AAM44913.1| putative cytosolic factor protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15218382|ref|NP_177360.1| PATL1 (PATELLIN 1); transporter [Arabidopsis thaliana] [NCBI NR]
  • gi|15028181|gb|AAK76587.1| putative cytosolic factor [Arabidopsis thaliana] [NCBI NR]
  • gi|12323660|gb|AAG51793.1|AC067754_9 cytosolic factor, putative; 12503-14597 [Arabidopsis thaliana] [NCBI NR]
  • Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2 [Swiss-Prot]
  • (Q9C7U0) Cytosolic factor, putative (Putative cytosolic factor protein) [athaliana3702.FASTAC.txt]
  • putative cytosolic factor protein [Arabidopsis thaliana]gi|15028181|gb|AAK76587.1| putative cytosolic factor [Arabidopsis thaliana]gi|25406149|pir||H96744 probable cytosolic factor T9N14.1 [imported] - Arabidopsis thalianagi|12323660|gb|AAG51793.1| cyt [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Patellin-1 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: PATL1 | PATL1 (PATELLIN 1); transporter | chr1:27152220-27154314 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • PATL1 (PATELLIN 1); transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cytosolic factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative cytosolic factor protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cytosolic factor, putative; 12503-14597 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Patellin-1 [nr-271106-contam.fasta]
  • | Symbols: PATL1 | PATELLIN 1 | chr1:27148558-27150652 FORWARD LENGTH=573 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 573 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    membrane [IDA]
    apoplast [IDA]
    vacuole [IDA]
    plasma membrane [IDA]
    Biological Process: pollen tube growth [IEP]
    transport [ISS]
    Molecular Function: transporter activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQEEVQKSA DVAAAPVVKE KPITDKEVTI PTPVAEKEEV AAPVSDEKAV PEKEVTPEKE  60
   61 APAAEAEKSV SVKEEETVVV AEKVVVLTAE EVQKKALEEF KELVREALNK REFTAPVTPV 120
  121 KEEKTEEKKT EEETKEEEKT EEKKEETTTE VKVEEEKPAV PAAEEEKSSE AAPVETKSEE 180
  181 KPEEKAEVTT EKASSAEEDG TKTVEAIEES IVSVSPPESA VAPVVVETVA VAEAEPVEPE 240
  241 EVSIWGVPLL QDERSDVILT KFLRARDFKV KEALTMLKNT VQWRKENKID ELVESGEEVS 300
  301 EFEKMVFAHG VDKEGHVVIY SSYGEFQNKE LFSDKEKLNK FLSWRIQLQE KCVRAIDFSN 360
  361 PEAKSSFVFV SDFRNAPGLG KRALWQFIRR AVKQFEDNYP EFAAKELFIN VPWWYIPYYK 420
  421 TFGSIITSPR TRSKMVLAGP SKSADTIFKY IAPEQVPVKY GGLSKDTPLT EETITEAIVK 480
  481 PAANYTIELP ASEACTLSWE LRVLGADVSY GAQFEPTTEG SYAVIVSKTR KIGSTDEPVI 540
  541 TDSFKVGEPG KIVITIDNQT SKKKKVLYRF KTQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..213] FFAS03 1.33 No description for 2j63A was found.
    3 View Details [214..573] PSI-BLAST 87.69897 The Crystal Structure of Human Supernatant Protein Factor


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle