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Protein Overview: RER5_ARATH

General Information:
Name(s) found: RER5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|4586056|gb|AAD25674.1| chloroplast lumen common protein family [Arabidopsis thaliana] [NCBI NR]
  • gi|30688262|ref|NP_850329.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • pir||A84829 hypothetical protein At2g40400 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20857082|gb|AAM26698.1| At2g40400/T3G21.17 [Arabidopsis thaliana] [NCBI NR]
  • gi|18405375|ref|NP_565930.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15294188|gb|AAK95271.1|AF410285_1 At2g40400/T3G21.17 [Arabidopsis thaliana] [NCBI NR]
  • Protein RETICULATA-RELATED 5, chloroplastic OS=Arabidopsis thaliana GN=RER5 PE=2 SV=1 [Swiss-Prot]
  • (Q9SIY5) At2g40400 protein (At2g40400/T3G21.17) [athaliana3702.FASTAC.txt]
  • At2g40400/T3G21.17 [Arabidopsis thaliana]gi|4586056|gb|AAD25674.1| chloroplast lumen common protein family [Arabidopsis thaliana]gi|15294188|gb|AAK95271.1| At2g40400/T3G21.17 [Arabidopsis thaliana]gi|25344247|pir||A84829 hypothetical protein At2g40400 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64033.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41449.1); similar to hypothetical protein OsI_ [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • chloroplast lumen common protein family [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At2g40400/T3G21.17 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56140.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64033.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41449.1); similar to hypothetical protein OsI_004191 [Oryza sativa (indica cultivar-group)] (GB:EAY76344.1); contains InterPro domain Protein of unknown function DUF399 (InterPro:IPR007314) | chr2:16876441-16879647 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Protein of unknown function (DUF399 and DUF3411) | chr2:16869363-16872569 FORWARD LENGTH=735 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At2g40400/T3G21.17 OS=Arabidopsis thaliana GN=At2g40400 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 735 amino acids

    Gene Ontology:
    Cellular Component: chloroplast thylakoid lumen [ISS]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS  60
   61 SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV ALPPVATAPP PPPVEKEEAI 120
  121 TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR 180
  181 CIESDRQLSL ALEAFPLDLQ EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD 240
  241 NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL 300
  301 TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP 360
  361 ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA ARPCSRNCFD RAEIARVMNA 420
  421 AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN 480
  481 RLAIEEAISI TTTLVAQYEK RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA 540
  541 DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA 600
  601 VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS 660
  661 DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT QKSVTTSNQI PEVASQSTVE 720
  721 YSTTEEASMD DLKNQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..118] deduced N/A No confident structure predictions are available.
    2 View Details [119..401] PSI-BLAST 48.30103 No description for 2g5gX was found.
    3 View Details [402..512] MSA 2.019981 View MSA. No confident structure predictions are available.
    4 View Details [513..735] MSA 1.016972 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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