YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|119360133, gi...

General Information:
Name(s) found: gi|7435380 [NCBI NR]
gi|7268777 [NCBI NR]
gi|3250690 [NCBI NR]
gi|15235200 [NCBI NR]
gi|119360133 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • pir||T04762 chitinase homolog T16H5.170 - Arabidopsis thaliana [NCBI NR]
  • gi|7268777|emb|CAB78983.1| putative chitinase [Arabidopsis thaliana] [NCBI NR]
  • gi|3250690|emb|CAA19698.1| putative chitinase [Arabidopsis thaliana] [NCBI NR]
  • gi|15235200|ref|NP_193716.1| glycosyl hydrolase family 18 protein [Arabidopsis thaliana] [NCBI NR]
  • gi|119360133|gb|ABL66795.1| At4g19810 [Arabidopsis thaliana] [NCBI NR]
  • (O81862) Putative chitinase [athaliana3702.FASTAC.txt]
  • putative chitinase [Arabidopsis thaliana]gi|7268777|emb|CAB78983.1| putative chitinase [Arabidopsis thaliana]gi|15235200|ref|NP_193716.1| glycosyl hydrolase family 18 protein [Arabidopsis thaliana]gi|7435380|pir||T04762 chitinase homolog T16H5.170 - Ar [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycosyl hydrolase family 18 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycosyl hydrolase family 18 protein | chr4:10764161-10765763 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative chitinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Glycosyl hydrolase family protein with chitinase insertion domain | chr4:10764151-10765753 REVERSE LENGTH=379 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At4g19810 OS=Arabidopsis thaliana GN=T16H5.170 PE=1 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: cell wall [IDA]
    Biological Process: carbohydrate metabolic process [IEA]
    Molecular Function: chitinase activity [IEA]
    catalytic activity [IEA]
    cation binding [IEA]
    hydrolase activity, hydrolyzing O-glycosyl compounds [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTKLISLI VSITFFLTLQ CSMAQTVVKA SYWFPASEFP VTDIDSSLFT HLFCAFADLN  60
   61 SQTNQVTVSS ANQPKFSTFT QTVQRRNPSV KTLLSIGGGI ADKTAYASMA SNPTSRKSFI 120
  121 DSSIRVARSY GFHGLDLDWE YPSSATEMTN FGTLLREWRS AVVAEASSSG KPRLLLAAAV 180
  181 FYSNNYYSVL YPVSAVASSL DWVNLMAYDF YGPGWSRVTG PPAALFDPSN AGPSGDAGTR 240
  241 SWIQAGLPAK KAVLGFPYYG YAWRLTNANS HSYYAPTTGA AISPDGSIGY GQIRKFIVDN 300
  301 GATTVYNSTV VGDYCYAGTN WIGYDDNQSI VTKVRYAKQR GLLGYFSWHV GADDNSGLSR 360
  361 AASQAWDATT ATTRTIQKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..379] PSI-BLAST 95.0 Specificity and affnity of natural product cyclopentapeptide inhibitor Argadin against human chitinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • chitinase activity
    		•  6.40555694403866 bayes_pls_golite062009
  • imaginal disc growth factor activity
    		•  3.9608908661313 bayes_pls_golite062009
  • growth factor activity
    		•  2.18932950777991 bayes_pls_golite062009
  • hydrolase activity, hydrolyzing O-glycosyl compounds
    		•  1.91170236789651 bayes_pls_golite062009
  • receptor binding
    		•  1.89435893935497 bayes_pls_golite062009
  • amylase activity
    		•  1.38959979746158 bayes_pls_golite062009
  • hydrolase activity, acting on glycosyl bonds
    		•  1.34796838721403 bayes_pls_golite062009
  • chitin binding
    		•  1.29046765706168 bayes_pls_golite062009
  • binding
    		•  1.1885466730171 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.80333288291596 bayes_pls_golite062009
  • glucosidase activity
    		•  0.766503513427695 bayes_pls_golite062009
  • protein binding
    		•  0.690517649847952 bayes_pls_golite062009
  • catalytic activity
    		•  0.534516847146079 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.266938437560648 bayes_pls_golite062009
  • hexosaminidase activity
    		•  0.21148675734804 bayes_pls_golite062009
  • hydrolase activity
    		•  0.178746202646272 bayes_pls_golite062009
  • pattern binding
    		•  0.113396113487931 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle