YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|7487902, gi|3...

General Information:
Name(s) found: gi|7487902 [NCBI NR]
gi|55740539 [NCBI NR]
gi|3152567 [NCBI NR]
gi|15219295 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • pir||T01043 hypothetical protein YUP8H12R.26 - Arabidopsis thaliana [NCBI NR]
  • gi|55740539|gb|AAV63862.1| hypothetical protein At1g79120 [Arabidopsis thaliana] [NCBI NR]
  • gi|3152567|gb|AAC17048.1| Contains similarity to membrane associated salt-inducible protein gb|AF007269 from A. thaliana [Arabidopsis thaliana] [NCBI NR]
  • gi|15219295|ref|NP_178033.1| ubiquitin thiolesterase [Arabidopsis thaliana] [NCBI NR]
  • (O64539) YUP8H12R.26 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein YUP8H12R.26 - Arabidopsis thalianagi|3152567|gb|AAC17048.1| Contains similarity to membrane associated salt-inducible protein gb|AF007269 from A. thaliana. [Arabidopsis thaliana]gi|15219295|ref|NP_178033.1| hypothetical protein [Ara [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70768.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) | chr1:2977220 [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Contains similarity to membrane associated salt-inducible protein gb|AF007269 from A. thaliana. [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein At1g79120 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70768.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) | chr1:29772207-29773448 REVERSE [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Ubiquitin carboxyl-terminal hydrolase family protein | chr1:29767314-29768555 REVERSE LENGTH=413 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Ubiquitin carboxyl-terminal hydrolase-like protein OS=Arabidopsis thaliana GN=YUP8H12R.26 PE=2 SV=1 [ARATH-contam.fasta]
  • Ubiquitin carboxyl-terminal hydrolase family protein OS=Arabidopsis thaliana GN=YUP8H12R.26 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 413 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPLLYRRS SIFSVILRIH KLRETESFVL FPGESSSRLQ WTFVQVRHKS GGGGWRPKQK  60
   61 VYHRVHDLDK AIDLNKKPSL ILQLKSIIQA QKHGSLLLRD LEKHVGFVHK WNLMAAIEKY 120
  121 PTIFYVGGGH KEPPFVMLTE KAKKIAAEES EATESMEPIL VNNLRKLLMM SVDCRVPLEK 180
  181 VEFIQSAMGL PQDFKSTLIP KYTEFFSLKV INGKVNLVLE NWDSSLAITA REDRLSREGF 240
  241 SESVGDRKRV RITKDGNFLG RNAFKISFPP GFRPNASYLE EFEKWQKMEF PSPYLNARRF 300
  301 DAADPKARKR VVAVLHELLS LTMEKRVTCA QLDAFHSEYL LPSRLILCLI KHQGIFYITN 360
  361 KGARGTVFLK DAYAGSNLIE KCPLLLFHDR FVALCGRKEV NLSNEMQSSS VFS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..224] deduced N/A No confident structure predictions are available.
    2 View Details [225..413] MSA 2.036949 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle