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Protein Overview: SYTC_ARATH

General Information:
Name(s) found: SYTC_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9665073|gb|AAF97275.1|AC034106_18 Strong similarity to threonyl-tRNA synthetase from Arabidopsis thaliana gb|Y14329 and is a member of the tRNA synthetase PF|00587 class II [NCBI NR]
  • gi|85701287|sp|Q8GZ45.2|SYTC_ARATH RecName: Full=Probable threonyl-tRNA synthetase, cytoplasmic; AltName: Full=Threonine--tRNA ligase; Short=ThrRS [NCBI NR]
  • pir||H86314 hypothetical protein F2H15.18 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15220911|ref|NP_173238.1| threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative [Arabidopsis thaliana] [NCBI NR]
  • Probable threonine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At1g17960 PE=2 SV=2 [Swiss-Prot]
  • (Q9LMT4) F2H15.18 protein [athaliana3702.FASTAC.txt]
  • hypothetical protein F2H15.18 [imported] - Arabidopsis thalianagi|15220911|ref|NP_173238.1| threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative [Arabidopsis thaliana]gi|9665073|gb|AAF97275.1| Strong similarity to threonyl-tRNA syntheta [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Threonyl-tRNA synthetase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative | chr1:6181008-6183730 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP binding / tRNA ligase/ threonine-tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Strong similarity to threonyl-tRNA synthetase from Arabidopsis thaliana gb|Y14329 and is a member of the tRNA synthetase PF|00587 class II [nr-271106-contam.fasta]
  • Probable threonyl-tRNA synthetase, cytoplasmic (Threonine--tRNA ligase) (ThrRS) [nr-271106-contam.fasta]
  • | Symbols: | Threonyl-tRNA synthetase | chr1:6181015-6183737 REVERSE LENGTH=458 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA]
    Biological Process: tRNA aminoacylation for protein translation [IEA]
    threonyl-tRNA aminoacylation [IEA][ISS]
    translation [IEA]
    Molecular Function: nucleotide binding [IEA]
    ATP binding [IEA]
    aminoacyl-tRNA ligase activity [IEA]
    threonine-tRNA ligase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNHHPKDE AYLSSVIPKR IRLFEEIQAE QLEQLQSRPH DPIKITLLPD GIEKEGRRWE  60
   61 TSPMDIAVQI SKGLAKSALV SSVNHVLWDM NRPLEGDCSL EIFGFDSDQG RNTFWHSSAH 120
  121 ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL 180
  181 HRNEDSGALG GMTRVRRFVQ DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST 240
  241 RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT 300
  301 IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA 360
  361 IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV ADARDAPYNY ILVVGQKEVA 420
  421 TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..458] PSI-BLAST 110.0 Threonyl-tRNA synthetase (ThrRS), C-terminal domain; Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain; Threonyl-tRNA synthetase (ThrRS), second 'additional' domain; Threonyl-tRNA synthetase (ThrRS)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.46366406733797 bayes_pls_golite062009
  • ligase activity
    		•  1.22215897446525 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.92307591122679 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.92307591122679 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.92307153294189 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle