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Protein Overview: COB21_ARATH

General Information:
Name(s) found: COB21_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|5902363|gb|AAD55465.1|AC009322_5 Putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana] [NCBI NR]
  • gi|30699476|ref|NP_178116.2| coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] [NCBI NR]
  • pir||C96831 hypothetical protein F18B13.7 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|238479130|ref|NP_001154478.1| protein binding / structural molecule [Arabidopsis thaliana] [NCBI NR]
  • gi|20259354|gb|AAM14001.1| putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana] [NCBI NR]
  • gi|146286086|sp|Q9CAA0.2|COB21_ARATH RecName: Full=Coatomer subunit beta'-1; AltName: Full=Beta'-coat protein 1; Short=Beta'-COP 1 [NCBI NR]
  • Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2 [Swiss-Prot]
  • (Q9SSD5) F18B13.7 protein (Putative coatomer protein complex, subunit beta 2) (Beta prime) [athaliana3702.FASTAC.txt]
  • putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana]gi|5902363|gb|AAD55465.1| Putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana]gi|30699476|ref|NP_178116.2| coatomer protein complex, su [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Coatomer protein complex [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | coatomer protein complex, subunit beta 2 (beta prime), putative | chr1:30090803-30096842 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative coatomer protein complex, subunit beta 2 (beta prime) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | structural molecules | chr1:30085910-30091949 FORWARD LENGTH=920 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 920 amino acids

    Gene Ontology:
    Cellular Component: membrane coat [IEA]
    endomembrane system [IEA]
    Golgi membrane [IEA]
    COPI vesicle coat [ISS]
    Biological Process: vesicle-mediated transport [IEA]
    intracellular protein transport [IEA]
    Molecular Function: protein binding [IEA]
    structural molecule activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRLEIKRK FAQRSERVKS VDLHPTEPWI LASLYSGTLC IWNYQTQTMV KSFDVTELPV  60
   61 RSAKFIARKQ WVVAGADDMF IRVYNYNTMD KIKVFEAHAD YIRCVAVHPT LPYVLSSSDD 120
  121 MLIKLWDWEK GWLCTQIFEG HSHYVMQVTF NPKDTNTFAS ASLDRTIKIW NLGSPDPNFT 180
  181 LDAHLKGVNC VDYFTGGDKP YLITGSDDHT AKVWDYQTKS CVQTLEGHTH NVSAVSFHPE 240
  241 LPIIITGSED GTVRIWHATT YRLENTLNYG LERVWAIGHI KGSRRVVIGY DEGSIMVKLG 300
  301 REIPVASMDN SGKIIWAKHN EIHTVNIKSV GADEVTDGER LPLAVKELGT CDLYPQSLKH 360
  361 NPNGRFVVVC GDGEYIIYTA LAWRNRSFGS ALEFVWSSDG EHAVRESSTK IKIFSKNFQE 420
  421 KKTVRPTFSA EHIFGGTLLT MCSSDFICFY DWAECRLIRR IDVTVKNLYW ADSGDLVAIA 480
  481 SDTSFYILKF NRDIVSSYFD GGKQIDEEGI EDAFELLNET NERVRTGLWV GDCFIYTNSS 540
  541 WRLNYCVGGE VTTMYHLDRP MYLLGYLANQ SRVYLIDKEF NVIGYTLLLS LIEYKTLVMR 600
  601 GDLEQANEVL PSIPKEHHNS VAHFLESRGM TEDALEVATD PDYRFELAIQ LGRLAVAKDI 660
  661 AVEAQNESKW KQLGELAMSS GKLDMAEECM RHAMDLSGLL LLYSSLGDAD GMMKLAALAK 720
  721 EQGKNNVAFL CLFMLGQVED CLHLLVESNR IPEAALMARS YLPSKVSEIV ALWRNDLTKI 780
  781 SPKAAESLAD PEEYPNLFEE WQVALSLENR AAETRGVHPP AGDYCSHADR DHTTLVDAFR 840
  841 IMQIEEEGRL EQGDVLDEVG EEGEDGEEEE EEDRQEESSD GRQQNVEEEA VVVDADSTDG 900
  901 AVLVNGNESE EQWVLTPPQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..300] PSI-BLAST 90.154902 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [301..358] PSI-BLAST 3.154902 Crystal Structure Of Human Fibroblast Activation Protein alpha
    3 View Details [359..453] deduced N/A No confident structure predictions are available.
    4 View Details [454..529] MSA 1.316993 View MSA. No confident structure predictions are available.
    5 View Details [530..612] deduced N/A No confident structure predictions are available.
    6 View Details [613..920] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle